Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021239
(788 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47959| Best HMM Match : rve (HMM E-Value=3e-29) 40 0.002
SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0) 32 0.46
SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_49941| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_27141| Best HMM Match : zf-CW (HMM E-Value=3.1) 29 3.2
SB_20703| Best HMM Match : TPR_1 (HMM E-Value=0) 29 4.3
SB_14077| Best HMM Match : TPR_1 (HMM E-Value=0) 29 4.3
SB_13250| Best HMM Match : Toxin_22 (HMM E-Value=1.2) 29 4.3
SB_32756| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_13725| Best HMM Match : zf-B_box (HMM E-Value=6e-14) 28 7.5
SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32) 28 9.9
SB_41781| Best HMM Match : TPR_1 (HMM E-Value=3.8e-21) 28 9.9
SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021) 28 9.9
SB_31683| Best HMM Match : ApoC-I (HMM E-Value=1.8) 28 9.9
>SB_47959| Best HMM Match : rve (HMM E-Value=3e-29)
Length = 622
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/40 (45%), Positives = 27/40 (67%)
Frame = +3
Query: 666 MVLAESGQYERALQHLQKFESQILDKLSVKETLGEYYLKL 785
MVL ESGQ A+++L E I DKL++KE G+ +++L
Sbjct: 1 MVLRESGQLNEAIKYLDTNEPLICDKLAIKEVQGQIFIEL 40
>SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 687
Score = 32.3 bits (70), Expect = 0.46
Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 1/115 (0%)
Frame = +1
Query: 178 RQTDIIQPKVRGAWRNLSHERSNIKFLGRKDEAYDYVRRGLRNDLKSPVCWHVYGLLQRS 357
R+ + P A NL + +K G EA + R + + W G ++ +
Sbjct: 453 REAVRLNPTYSDALNNLGNL---LKEKGEISEAEKLLERAVDSSKAFAAGWMNLGTVKAA 509
Query: 358 DKKYDEAIKCYRNALKWEKENIQILRDLSLLQIQM-RDLEGYKDTRYQLFMRGLH 519
K EA CY+NA+++ K+ +L L I RD E R + ++ H
Sbjct: 510 LNKMQEAETCYKNAIRYRKKYPDAFFNLGNLYIDWNRDAEAVAAFRKAVKLKSDH 564
>SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1524
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/46 (39%), Positives = 30/46 (65%)
Frame = +1
Query: 364 KYDEAIKCYRNALKWEKENIQILRDLSLLQIQMRDLEGYKDTRYQL 501
KYDE I+ + L EKE I+I +L+ L+ +++DLE + R++L
Sbjct: 208 KYDE-IEKEKGVL--EKEKIEIFDELNKLEERLQDLEDLQAQRFEL 250
>SB_49941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = +3
Query: 612 QMKGPYDYEHSELLLYQNMVLAESGQYERALQHLQKFESQILDKLSVKETLGE 770
Q+K D++ E++ ++++ A + ER L LQKF+S++ K ++ GE
Sbjct: 400 QVKVQSDHKPLEIIFKKSLISAPK-RLERMLLRLQKFDSEVSYKKGMRSPRGE 451
>SB_27141| Best HMM Match : zf-CW (HMM E-Value=3.1)
Length = 397
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +1
Query: 355 SDKKY-DEAIKCYRNALKWE--KENIQILRDLSLLQIQMRDLEGYKDTRYQLFMR 510
+D+KY D ++ +RNA+ W+ ++ + ++ DL ++ R + G + R + R
Sbjct: 126 ADQKYLDALVETFRNAMSWDTRRQALSLVADLVPFKVIERQIPGISEYRVKAARR 180
>SB_20703| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 693
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Frame = +1
Query: 259 GRKDEAYDYVRRGLR------NDLKSPVCWHVYGLLQRSDKKYDEAIKCYRNALK 405
G +EA Y ++ L+ N+ K GL+Q+S Y+EAIK Y+ AL+
Sbjct: 66 GNYEEAMKYCQQALQVYISTGNESKQADVRQSIGLVQQSLGNYEEAIKYYQQALQ 120
>SB_14077| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 357
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Frame = +1
Query: 259 GRKDEAYDYVRRGLR------NDLKSPVCWHVYGLLQRSDKKYDEAIKCYRNALK 405
G +EA Y ++ L+ N+ K GL+Q+S Y+EAIK Y+ AL+
Sbjct: 66 GNYEEAMKYCQQALQVYISTGNESKQADVRQSIGLVQQSLGNYEEAIKYYQQALQ 120
>SB_13250| Best HMM Match : Toxin_22 (HMM E-Value=1.2)
Length = 376
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1
Query: 227 RFLHAPRTLGWIISVWRILTHFCIVYVRSTAKF 129
RF+ R L W I+V+R L+ F +VY R ++F
Sbjct: 15 RFIAVYRGLSWFIAVYRGLSWFIVVY-RGLSRF 46
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 239 LSWLRFLHAPRTLGWIISVWRILTHFCIVY 150
LSW F+ R L W I V+R L+ F +VY
Sbjct: 23 LSW--FIAVYRGLSWFIVVYRGLSRFIVVY 50
>SB_32756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 23 NYFNLLENY*KEN*FLTNKMPPSNP 97
N FN+LE++ KE F T+ PSNP
Sbjct: 86 NTFNVLEHFWKEALFSTSSESPSNP 110
>SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 720
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 377 ASSYFLSERCNSPYTCQHTGDFRSLRRP 294
A +Y +CN P C+H G +R+ +RP
Sbjct: 403 AVTYQSDCQCNDP-ACEHKGSYRAFKRP 429
>SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1150
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 627 YDYEHSELLLYQNMVLAESGQYERALQHLQKFESQI 734
Y E+S L LY+ VL E+ + ERAL+H+ + +I
Sbjct: 55 YGKENSSLYLYK--VLQETAKTERALKHVDSVKLEI 88
>SB_13725| Best HMM Match : zf-B_box (HMM E-Value=6e-14)
Length = 594
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -2
Query: 367 ISCQSAATAHTHANILGTSDHYVDLCVHSH 278
ISC++ T H + S+ D C+ SH
Sbjct: 96 ISCETCPTDHASGRCVDCSEFMCDFCIESH 125
>SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = +1
Query: 193 IQPKVRGAWRNLSHERSNI-KFLGRKDEAYDYVRRGLRNDLKSPVCWHVYGLLQRSDKKY 369
I PK + L + R+ + LG+ D+A + + + D + +KY
Sbjct: 62 IDPKNKSTNAKLYYNRAVVGSKLGKNDQAIEDCTQAMNLDHTYTKAYLKRANCYMESEKY 121
Query: 370 DEAIKCYRNALKWEKENIQILRDLSLLQIQMR 465
+EA++ Y + K ++ + + R L +++++
Sbjct: 122 EEAVRDYESLCKKDRSSREFRRLLEKAKLELK 153
>SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32)
Length = 264
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = +1
Query: 193 IQPKVRGAWRNLSHERSNI-KFLGRKDEAYDYVRRGLRNDLKSPVCWHVYGLLQRSDKKY 369
I PK + L + R+ + LG+ D+A + + + D + +KY
Sbjct: 62 IDPKNKSTNAKLYYNRAVVGSKLGKNDQAIEDCTQAMNLDHTYTKAYLKRANCYMESEKY 121
Query: 370 DEAIKCYRNALKWEKENIQILRDLSLLQIQMR 465
+EA++ Y + K ++ + + R L +++++
Sbjct: 122 EEAVRDYESLCKKDRSSREFRRLLEKAKLELK 153
>SB_41781| Best HMM Match : TPR_1 (HMM E-Value=3.8e-21)
Length = 430
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 283 YVRRGLRNDLKSPVCWHVYGLLQRSDKKYDEAIKCYRNAL 402
YV RG D K ++ GLL S K YD A +C+ A+
Sbjct: 59 YVARG---DAKRGKVYNDLGLLYNSLKSYDNAAECFEIAI 95
>SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)
Length = 358
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = -3
Query: 768 PPKFLSQIIYPEFDFQTSVNAVKLSHI---VLIRPVPYSGIIAIRSVHNHMDLSSDECGM 598
PP + +I + V AV ++ + +++ VP + ++ N DL D G
Sbjct: 72 PPVNATPVIIDPDQLPSHVRAVPITSLPNRLIVNSVPMATPTYVQPPSNEADLPLDPTGN 131
Query: 597 HLGYCLPFHNH 565
H Y +H+H
Sbjct: 132 HRHYHHHYHHH 142
>SB_31683| Best HMM Match : ApoC-I (HMM E-Value=1.8)
Length = 804
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 205 VRGAWRNLSHERSNIKFLGRKDEAY 279
VRG WRN SHE+ ++ + Y
Sbjct: 741 VRGVWRNHSHEKRGVRLVAELSLEY 765
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,469,420
Number of Sequences: 59808
Number of extensions: 538226
Number of successful extensions: 1339
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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