Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021238
(743 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0452 - 18038182-18038253,18038338-18038415,18038502-180385... 102 3e-22
01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559... 79 5e-15
04_04_1079 - 30663919-30665044,30665143-30665298,30665405-306655... 52 5e-07
11_08_0102 - 28354880-28355056,28355159-28355376,28355634-283557... 30 1.7
08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767 29 2.9
10_08_0825 + 20831170-20831349,20831380-20831547,20831627-208316... 28 6.8
>10_08_0452 -
18038182-18038253,18038338-18038415,18038502-18038579,
18039112-18039168,18039276-18039349,18039424-18039495,
18039609-18039670,18039861-18039962,18040378-18040490,
18040809-18040940,18041156-18041243,18041617-18041711,
18041793-18042023,18042567-18042680,18042765-18042866,
18043091-18043207,18043301-18044146
Length = 810
Score = 102 bits (244), Expect = 3e-22
Identities = 44/76 (57%), Positives = 60/76 (78%)
Frame = -3
Query: 738 FLEEAVKESCEGLMVKMLTGDNSKYDIARRSHNWLKLKQDYLEGVGDTVDAVIIGAYRGK 559
FL+ AV SCEGL++K L D + Y+ A+RS+NWLKLK+DY++ +GD++D V I A+ G+
Sbjct: 605 FLDTAVNSSCEGLIIKTLDKD-ATYEPAKRSNNWLKLKKDYMDSIGDSLDLVPIAAFHGR 663
Query: 558 GKRAGVYGGFLVACYD 511
GKR GVYG FL+ACYD
Sbjct: 664 GKRTGVYGSFLLACYD 679
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/88 (36%), Positives = 50/88 (56%)
Frame = -2
Query: 508 ESEQFQSLCKLGTGFSDEDLQALSDMLKEHIIDSPRNYYNYDSSHSADVWTSAAVVVEVP 329
++E++Q++C +GTGFS++ L+ S L+ I P+ YY + + DVW + V EV
Sbjct: 681 QNEEYQTICNIGTGFSEQQLEERSVSLRTKAIPKPKAYYRFADTMDPDVWFEPSEVWEVK 740
Query: 328 AQTCPSRSAHRAAIARLHPHKGVSLASP 245
A HRAA + P+KG+SL P
Sbjct: 741 AADLSISPVHRAANGIVDPNKGISLRFP 768
>01_06_0293 - 28254673-28254878,28255189-28255306,28255767-28255961,
28256701-28256800,28256887-28256972,28257078-28257239,
28257965-28258101,28258233-28258281,28258688-28258746,
28258862-28258896,28259384-28259433,28260173-28260332,
28260898-28260963,28261065-28261162,28261649-28261696,
28262114-28262242,28262667-28262769,28262858-28262954,
28263181-28263241,28263659-28263740,28263845-28263962,
28264039-28266325
Length = 1481
Score = 78.6 bits (185), Expect = 5e-15
Identities = 36/76 (47%), Positives = 56/76 (73%)
Frame = -3
Query: 738 FLEEAVKESCEGLMVKMLTGDNSKYDIARRSHNWLKLKQDYLEGVGDTVDAVIIGAYRGK 559
F + A + SCEG+M+K+L D + Y ++R +WLK+K+DY+ G+GD++D V IGA+ G
Sbjct: 1213 FFKMACQSSCEGIMLKILDVD-AGYSASKRCDSWLKVKRDYV-GLGDSLDLVPIGAWYGN 1270
Query: 558 GKRAGVYGGFLVACYD 511
G++AG Y FL+ACY+
Sbjct: 1271 GRKAGWYSPFLMACYN 1286
Score = 35.1 bits (77), Expect = 0.059
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -2
Query: 406 PRNYYNYDSSHSADVWTSAAVVVEVPAQTCPSRSAHRAAIARLHPHKGVSLASP 245
P+ Y + ++W SA V E+ H AAI +HP +G+S+ P
Sbjct: 1386 PKKPVYYKTDELPELWFSAEQVWEIRGADLTLSPVHHAAIGLVHPSRGISVRMP 1439
Score = 32.3 bits (70), Expect = 0.42
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = -2
Query: 511 PESEQFQSLCKLGTGFSDE 455
PE E+FQS+C++ +GFSDE
Sbjct: 1287 PEYEEFQSVCRVMSGFSDE 1305
>04_04_1079 -
30663919-30665044,30665143-30665298,30665405-30665563,
30665640-30665770,30666230-30666315,30666607-30666673,
30666944-30667023,30667173-30667260,30667380-30667428,
30667516-30667608,30667725-30667808,30667986-30668044,
30668293-30668327,30668416-30668718,30669111-30669275,
30669701-30669780,30670932-30671003,30671143-30671234,
30671359-30671433,30671552-30671688,30671763-30671890,
30671942-30672033,30672473-30672808
Length = 1230
Score = 52.0 bits (119), Expect = 5e-07
Identities = 28/62 (45%), Positives = 37/62 (59%)
Frame = -3
Query: 708 EGLMVKMLTGDNSKYDIARRSHNWLKLKQDYLEGVGDTVDAVIIGAYRGKGKRAGVYGGF 529
EG+++K L SK++ RS WLKLK DY+ G +D +IIG Y G G+R G F
Sbjct: 454 EGIILKDL---ESKWEPGDRSGKWLKLKPDYIH-AGADLDVIIIGGYYGSGRRGGEVAQF 509
Query: 528 LV 523
LV
Sbjct: 510 LV 511
Score = 36.7 bits (81), Expect = 0.019
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Frame = -2
Query: 502 EQFQSLCKLGTGFSDEDLQALSDMLKEHIIDS-----PRNYYNY--DSSHSADVW 359
++F S C++GTG SDE+L AL LK H + P +Y S DVW
Sbjct: 524 KRFLSFCRVGTGLSDEELDALVTKLKPHFRKNEYPKKPPRFYEVTNHSKERPDVW 578
>11_08_0102 -
28354880-28355056,28355159-28355376,28355634-28355712,
28356451-28356519,28356602-28356681,28356818-28356925,
28357103-28357169,28357894-28357959,28358042-28358119,
28358198-28358250,28359542-28359575,28359851-28359865,
28360082-28360109,28360628-28360716,28361688-28361810,
28362192-28362296,28362381-28362485,28362924-28363139,
28364656-28364845,28365193-28365418,28366096-28366162
Length = 730
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -2
Query: 115 TSTERIQLT*TELLHIPRCV 56
T+T ++Q+ E+LHIPRCV
Sbjct: 270 TATNKVQIDLIEMLHIPRCV 289
>08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767
Length = 1041
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = -3
Query: 735 LEEAVKESCEGL--MVKMLTGDNSKYDIARRSHNWLKLKQDYLEGVGDTVDAVIIGAYRG 562
+E KESCEGL + K S + +R L K + + AV+I G
Sbjct: 619 VENEQKESCEGLTALQKAKIAGISDIESFKRLLKGLTEKVSWQSDAASAIAAVVIQCRSG 678
Query: 561 KGKRAGV 541
GKR V
Sbjct: 679 SGKRRNV 685
>10_08_0825 +
20831170-20831349,20831380-20831547,20831627-20831698,
20831997-20832075,20832182-20832375,20832469-20832558,
20832851-20832940,20833196-20833282,20833477-20833560,
20833690-20833809,20834096-20834103,20834443-20834575,
20835044-20835125,20835330-20835496,20836006-20836493,
20836551-20836638,20836716-20836818,20836932-20837083,
20837191-20837316,20837459-20837529,20837691-20837753,
20838418-20838490,20838972-20839040,20839180-20839257,
20839434-20839484,20839586-20839696
Length = 1008
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = -2
Query: 340 VEVPAQTCPSRSAHRAAIARLHPHKGVSLAS 248
+EVPA+ + +A RA IA L PH+ +SL S
Sbjct: 59 IEVPARAAAAAAAARA-IAGLPPHEKISLPS 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,116,921
Number of Sequences: 37544
Number of extensions: 220196
Number of successful extensions: 867
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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