Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021238
         (743 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4425| Best HMM Match : DNA_ligase_A_M (HMM E-Value=0)              119   3e-27
SB_6243| Best HMM Match : No HMM Matches (HMM E-Value=.)               46   4e-05

>SB_4425| Best HMM Match : DNA_ligase_A_M (HMM E-Value=0)
          Length = 575

 Score =  119 bits (286), Expect = 3e-27
 Identities = 54/76 (71%), Positives = 63/76 (82%)
 Frame = -3

Query: 738 FLEEAVKESCEGLMVKMLTGDNSKYDIARRSHNWLKLKQDYLEGVGDTVDAVIIGAYRGK 559
           FLEE++K +CEGLMVK L  D + Y+IA+RSHNWLKLK+DYL  VGDT+D V IG YRGK
Sbjct: 336 FLEESIKGNCEGLMVKTLDVD-ATYEIAKRSHNWLKLKKDYLADVGDTLDLVPIGGYRGK 394

Query: 558 GKRAGVYGGFLVACYD 511
           GKR G YGGFL+ACYD
Sbjct: 395 GKRTGAYGGFLLACYD 410



 Score = 71.3 bits (167), Expect = 8e-13
 Identities = 30/71 (42%), Positives = 43/71 (60%)
 Frame = -2

Query: 508 ESEQFQSLCKLGTGFSDEDLQALSDMLKEHIIDSPRNYYNYDSSHSADVWTSAAVVVEVP 329
           ESE+FQ++CK+GTGF+DE L++     K+H+ID P+ YY YD     D W  A  V +  
Sbjct: 412 ESEEFQTICKIGTGFTDEVLESHHQFFKDHVIDKPKPYYRYDDGLEPDHWFDAVQVAQGA 471

Query: 328 AQTCPSRSAHR 296
           + +    S HR
Sbjct: 472 SPSAYGASHHR 482


>SB_6243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 681

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 24/64 (37%), Positives = 35/64 (54%)
 Frame = -3

Query: 735 LEEAVKESCEGLMVKMLTGDNSKYDIARRSHNWLKLKQDYLEGVGDTVDAVIIGAYRGKG 556
           L EA+    EGL+VK  + D+      R    WLK+K +Y+  + D +D VI+G Y G G
Sbjct: 368 LNEAIDRREEGLVVK--SRDSVYKPNVRNGGGWLKIKPEYVASLSDDLDVVIVGGYFGVG 425

Query: 555 KRAG 544
             +G
Sbjct: 426 VGSG 429


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,030,865
Number of Sequences: 59808
Number of extensions: 240879
Number of successful extensions: 576
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)