Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021238
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.75 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   7.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 417  MCSFSMSDKACRSSSEKPVPSLHSD 491
            M S ++ D+ CR+S   PVP L  D
Sbjct: 1323 MRSKALIDQLCRNSRRTPVPRLAQD 1347


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 379 SHSADVWTSAAVVVEVPAQTCP 314
           S  A VW  A    EVP   CP
Sbjct: 178 SFPAIVWWRAVRTEEVPEDKCP 199


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 316 PSRSAHRAAIARLHPHKGVS 257
           PS   H+   ++ HPH+G S
Sbjct: 314 PSYHPHQHHPSQYHPHRGSS 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,091
Number of Sequences: 438
Number of extensions: 2269
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)