Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021238
(743 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g08130.1 68414.m00892 DNA ligase / polydeoxyribonucleotide sy... 100 1e-21
At1g49250.1 68414.m05522 ATP dependent DNA ligase family protein... 94 1e-19
At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein... 90 2e-18
At5g57160.1 68418.m07140 DNA ligase IV identical to DNA ligase I... 57 1e-08
At5g02860.1 68418.m00229 pentatricopeptide (PPR) repeat-containi... 31 0.61
At1g03210.1 68414.m00299 phenazine biosynthesis PhzC/PhzF family... 29 3.3
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 28 5.7
At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family pr... 27 9.9
>At1g08130.1 68414.m00892 DNA ligase / polydeoxyribonucleotide
synthase [ATP] identical to SP|Q42572 DNA ligase (EC
6.5.1.1) (Polydeoxyribonucleotide synthase [ATP])
{Arabidopsis thaliana}; contains Pfam profiles: PF01068
ATP dependent DNA ligase domain, PF04679 ATP dependent
DNA ligase C terminal region, PF04675 DNA ligase N
terminus
Length = 790
Score = 100 bits (239), Expect = 1e-21
Identities = 43/76 (56%), Positives = 59/76 (77%)
Frame = -3
Query: 738 FLEEAVKESCEGLMVKMLTGDNSKYDIARRSHNWLKLKQDYLEGVGDTVDAVIIGAYRGK 559
FL+ +V CEGL++K L D + Y+ A+RS+NWLKLK+DY++ +GD+VD V I A+ G+
Sbjct: 586 FLDASVDVGCEGLIIKTLDSD-ATYEPAKRSNNWLKLKKDYMDSIGDSVDLVPIAAFHGR 644
Query: 558 GKRAGVYGGFLVACYD 511
GKR GVYG FL+ACYD
Sbjct: 645 GKRTGVYGAFLLACYD 660
Score = 76.2 bits (179), Expect = 2e-14
Identities = 37/88 (42%), Positives = 48/88 (54%)
Frame = -2
Query: 508 ESEQFQSLCKLGTGFSDEDLQALSDMLKEHIIDSPRNYYNYDSSHSADVWTSAAVVVEVP 329
+ E+FQS+CK+GTGFSD L S L+ +I +P+ YY S + DVW V EV
Sbjct: 662 DKEEFQSICKIGTGFSDAMLDERSSSLRSQVIATPKQYYRVGDSLNPDVWFEPTEVWEVK 721
Query: 328 AQTCPSRSAHRAAIARLHPHKGVSLASP 245
A HRAA + P KG+SL P
Sbjct: 722 AADLTISPVHRAATGIVDPDKGISLRFP 749
>At1g49250.1 68414.m05522 ATP dependent DNA ligase family protein
contains Pfam profile: PF01068 ATP dependent DNA ligase
domain
Length = 657
Score = 93.9 bits (223), Expect = 1e-19
Identities = 39/76 (51%), Positives = 57/76 (75%)
Frame = -3
Query: 738 FLEEAVKESCEGLMVKMLTGDNSKYDIARRSHNWLKLKQDYLEGVGDTVDAVIIGAYRGK 559
FL+ ++ CEGLM+K L N+ Y+ A+RS+NWLKLK+DY++ +GD+VD V I + G+
Sbjct: 453 FLKASIDIGCEGLMIKSLYS-NATYEPAKRSNNWLKLKKDYMDNIGDSVDLVPIATFHGR 511
Query: 558 GKRAGVYGGFLVACYD 511
GKR G +G +L+ACYD
Sbjct: 512 GKRTGFFGAYLLACYD 527
Score = 75.8 bits (178), Expect = 3e-14
Identities = 37/88 (42%), Positives = 50/88 (56%)
Frame = -2
Query: 508 ESEQFQSLCKLGTGFSDEDLQALSDMLKEHIIDSPRNYYNYDSSHSADVWTSAAVVVEVP 329
+ E+FQS+CK+GT FSD +LQ LS L +I +P+ YY D+ + DVW V EV
Sbjct: 529 DKEEFQSICKIGTEFSDVELQDLSSSLCSKVIATPKQYYQVDNDLNPDVWLEPTEVWEVK 588
Query: 328 AQTCPSRSAHRAAIARLHPHKGVSLASP 245
A +R AI + P KG+SL P
Sbjct: 589 AADLTVSPVYREAIGIVDPDKGISLRFP 616
>At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein
contains Pfam profile: PF01068 ATP dependent DNA ligase
domain
Length = 1417
Score = 89.8 bits (213), Expect = 2e-18
Identities = 41/76 (53%), Positives = 58/76 (76%)
Frame = -3
Query: 738 FLEEAVKESCEGLMVKMLTGDNSKYDIARRSHNWLKLKQDYLEGVGDTVDAVIIGAYRGK 559
FLEEA + SCEG+MVK L N+ Y +RS +WLK+K+DY++G+GDT+D V IGA+ G
Sbjct: 1201 FLEEAFQSSCEGIMVKSLDV-NAGYCPTKRSDSWLKVKRDYVDGLGDTLDLVPIGAWYGN 1259
Query: 558 GKRAGVYGGFLVACYD 511
G++AG Y FL+AC++
Sbjct: 1260 GRKAGWYSPFLMACFN 1275
Score = 46.8 bits (106), Expect = 2e-05
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 16/105 (15%)
Frame = -2
Query: 511 PESEQFQSLCKLGTGFSD----EDLQALS-DMLKEHIIDSPRNYYN-----------YDS 380
PE+E+FQS+C++ +GFSD E +++ + +L D + +Y+ Y +
Sbjct: 1276 PETEEFQSVCRVMSGFSDAFYIEVMKSSTLTLLFNDETDGMKEFYSEDKILAKKPPYYRT 1335
Query: 379 SHSADVWTSAAVVVEVPAQTCPSRSAHRAAIARLHPHKGVSLASP 245
+ D+W SA VV E+ H A++ +HP +G+S+ P
Sbjct: 1336 GETPDMWFSAEVVWEIRGADFTVSPVHSASLGLVHPSRGISVRFP 1380
>At5g57160.1 68418.m07140 DNA ligase IV identical to DNA ligase IV
GI:9651815 from [Arabidopsis thaliana]; identical to
cDNA DNA ligase IV, GI:9651814
Length = 1219
Score = 56.8 bits (131), Expect = 1e-08
Identities = 31/76 (40%), Positives = 44/76 (57%)
Frame = -3
Query: 738 FLEEAVKESCEGLMVKMLTGDNSKYDIARRSHNWLKLKQDYLEGVGDTVDAVIIGAYRGK 559
F +E V+ EG+++K L SK++ RS W+KLK +Y+ D +D +IIG Y G
Sbjct: 408 FFKETVENRDEGIVLKDL---ESKWEPGDRSGKWMKLKPEYIRAGAD-LDVLIIGGYYGS 463
Query: 558 GKRAGVYGGFLVACYD 511
G+R G FLVA D
Sbjct: 464 GRRGGEVAQFLVALAD 479
Score = 34.3 bits (75), Expect = 0.087
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Frame = -2
Query: 499 QFQSLCKLGTGFSDEDLQALSDMLK------EHIIDSPRNYYNY--DSSHSADVW 359
+F S C++GTG SD++L + LK EH +P ++Y S DVW
Sbjct: 489 RFMSFCRVGTGLSDDELNTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKERPDVW 543
>At5g02860.1 68418.m00229 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 819
Score = 31.5 bits (68), Expect = 0.61
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = -3
Query: 738 FLEEAVKESCEGLMVKMLTGDNSKYDIARRSHNWLKLKQDYLEGVGDTVDAVIIGAYRGK 559
F ++ S E L G + K+D+A R+ +W ++DY + ++V A+II +
Sbjct: 127 FKDKPESTSSELLAFLKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKE 186
Query: 558 GK 553
G+
Sbjct: 187 GR 188
>At1g03210.1 68414.m00299 phenazine biosynthesis PhzC/PhzF family
protein contains Pfam profile: PF02567 phenazine
biosynthesis-like protein
Length = 286
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -3
Query: 735 LEEAVKESCEGLMVKMLTGDNSKYDIARR 649
L+E K CEG+MV D S YD R
Sbjct: 185 LDEISKCPCEGMMVTAAASDGSTYDFCSR 213
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 136 PTPLTKTTSTERIQLT*TELLHIPRCV 56
P T+T+++Q E+LHIP+CV
Sbjct: 247 PMVALTATATQKVQNDLIEMLHIPKCV 273
>At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain, weak hit to PF01661: Appr-1-p
processing enzyme family
Length = 912
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -2
Query: 349 AVVVEVPAQTCPSRSAHR 296
AVV+E+PAQ C SRS R
Sbjct: 315 AVVLELPAQVCISRSVKR 332
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,961,698
Number of Sequences: 28952
Number of extensions: 162103
Number of successful extensions: 537
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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