Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021236
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    27   4.4  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   7.6  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   7.6  
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    26   7.6  
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    26   7.6  

>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 795 GNISCGPADPNPLIHTTRPNRARLHPT 715
           G++      P+P IHT  PN A  HP+
Sbjct: 559 GDVGLRLPSPSPRIHTIVPNSAPEHPS 585


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 21/76 (27%), Positives = 31/76 (40%)
 Frame = +1

Query: 247 KLMQANY*TMKSSRRQSHKFNS*KISTRKEKKNDLKS*EYVTQRHLANASVTVS*KVYRF 426
           K+ +A     KSS  + H     K S+ K K+ND  S    T       S+T +  V   
Sbjct: 541 KIYKAQQHKQKSSHHKHHHHKKSKSSSSKHKENDKASVSITT---TTTPSITPADPVPTS 597

Query: 427 KKKMKLNLFKRSMIFA 474
            K + +   KR  + A
Sbjct: 598 PKPLAIEPVKRKPVHA 613


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 662 ESR*SPSSSLGVVWYSGAVGCSLALFGRVVCISGLGSAGPHEMFPQTSP-SW 814
           ESR  P +   V+W +G  GCS +L G  + + G  S     + P+ +P SW
Sbjct: 607 ESRNDPENDPVVLWLNGGPGCS-SLTGLFMEL-GPSSINIETLKPEYNPHSW 656


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +1

Query: 232 AGTKEKLMQANY*TMKSSRRQSHKFNS*KISTRKEKK---NDLKS 357
           A   E+L   N+ T  + +R++HK    KIS  K  K   ND KS
Sbjct: 431 AEADERLRLENFSTWVNEKRETHKILLEKISKNKRLKFELNDRKS 475


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 461 DLLNRLSFIFFLNRYTFHETV 399
           +L ++ ++ FF N+Y FHE +
Sbjct: 148 ELTSKYNYRFFWNKYAFHELI 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,158,022
Number of Sequences: 5004
Number of extensions: 61496
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)