Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021236
         (839 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0121 - 14840494-14841276                                         34   0.12 
05_02_0006 - 5541290-5541961                                           30   2.6  
03_05_1011 + 29658144-29658310,29659531-29659676,29660526-296606...    29   6.1  
06_03_0188 - 17691582-17692241                                         28   8.1  
02_05_0351 + 28230695-28230882,28230998-28231143,28231264-282313...    28   8.1  

>09_04_0121 - 14840494-14841276
          Length = 260

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -1

Query: 749 RPARTEQGCTQQRRCTTPRPATSWVITGFHAYIIIPPAVSDVQLPVALEEAK 594
           RP         QRR    +P TS V+ G  ++ +IPP  S++ +PV L E++
Sbjct: 202 RPVAVAVAAAGQRRAPATKPKTSRVLYGGPSF-VIPPDPSELPIPVLLLESR 252


>05_02_0006 - 5541290-5541961
          Length = 223

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 778 AGRP*SANTHDPPEQSKAAPNSAAVPHHAQRRA 680
           AG P S+ +   P  S+  P S+AVP H+  RA
Sbjct: 136 AGSPGSSASRSSPAASQGRPTSSAVPPHSLARA 168


>03_05_1011 +
           29658144-29658310,29659531-29659676,29660526-29660602,
           29660682-29660804,29661817-29661924,29661995-29662075,
           29662157-29662309,29662469-29662540,29662745-29662863,
           29662958-29663071,29663176-29663221,29664865-29664933,
           29665662-29665808,29666410-29666706
          Length = 572

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 608 GPQGVERHLRPEEL*YKRESR*SPSSSLGVVWYSGAVGCS 727
           G  GV+     E   Y  ES  SPS+   ++W +G  GCS
Sbjct: 56  GYVGVDEETGTELFYYFVESERSPSTGPVILWLTGGPGCS 95


>06_03_0188 - 17691582-17692241
          Length = 219

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 746 PARTEQGCTQQRRCTTPRPATSWVIT 669
           P R   G  QQR  T P PA+ WV+T
Sbjct: 4   PRRPCHGQRQQRYTTYPLPASPWVMT 29


>02_05_0351 +
           28230695-28230882,28230998-28231143,28231264-28231343,
           28231805-28231907,28233027-28233050,28233246-28233418,
           28233742-28233888,28234011-28234082,28234387-28234505,
           28234626-28234739,28234994-28235039,28235169-28235252
          Length = 431

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 608 GPQGVERHLRPEEL*YKRESR*SPSSSLGVVWYSGAVGCSL 730
           G  GVE     E   Y  ES  SP S + ++W SG   CS+
Sbjct: 63  GYVGVEEETGTELFYYFVESERSPRSDVVLLWLSGGPRCSV 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,458,463
Number of Sequences: 37544
Number of extensions: 413479
Number of successful extensions: 1081
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)