Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021236
         (839 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)              31   0.88 
SB_39845| Best HMM Match : Methyltransf_10 (HMM E-Value=0)             31   1.5  
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    29   6.2  
SB_50789| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6)               28   8.2  

>SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)
          Length = 1977

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = -3

Query: 789 ISCGPADPNPLIHTTRPNR--ARLHPTAPLYHTTPSDELGDYRLSRLYHNSSGRK*RSTP 616
           ++CG + P+ + HT RP +  A  HPT+   + T S ++     +  ++  +  +  ST 
Sbjct: 621 VTCGESTPSAVTHTERPLQGIAAPHPTSRAAYITNSPQVTTTNAAYGFNRGTAPQMPSTT 680

Query: 615 CGPRRGQS 592
            G R  Q+
Sbjct: 681 IGGRHDQA 688


>SB_39845| Best HMM Match : Methyltransf_10 (HMM E-Value=0)
          Length = 493

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 265 SSLASIFPSFRRFTRRNA*KDRVAALFHSNFQFRMLTC 152
           S LA+I+P F++FTR N+    V+  F      R +TC
Sbjct: 21  SELAAIYPEFKKFTRENS-SGTVSINFKDPEALRAVTC 57


>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1468

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 9/53 (16%)
 Frame = -3

Query: 822 TCSQLGE--VWGNISCGPADPNPLIHTT-------RPNRARLHPTAPLYHTTP 691
           TC + G   VW  + C   DPNP +HTT        P R    PT     TTP
Sbjct: 328 TCDESGMIMVWDGLGCF-RDPNPNVHTTDAPKHTTEPPRTTPEPTTEPPQTTP 379



 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -3

Query: 822 TCSQLGEV--WGNISCGPADPNPLIHTTRPNRARLHPTAPLYHTTP 691
           TC + G +  W  + C   DPNP +HTT      L PT     TTP
Sbjct: 693 TCDESGMIMAWDGLGCFK-DPNPNVHTT----DALKPTTEPPRTTP 733


>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 271  TMKSSRRQSHKFNS*K-ISTRKEKKNDLKS*EYVTQRHLANASVTV 405
            T K S R+S K N  + +S RK +  D    +YV  RH +   V+V
Sbjct: 4028 TFKESYRRSEKLNKRQPVSARKRRAVDSVLTDYVRLRHASRRQVSV 4073


>SB_50789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 777

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = +3

Query: 375 TPSSERISNCFVKSVSI*KKNEAQSIQEVHDIRYVFRFVSVYSFDVGSL 521
           T  S RI +   +SVS   +N    I     I YVF    VY FD+  L
Sbjct: 646 TDPSARICDSTHRSVSAASRNLLPKIPSNVQINYVFELHFVYPFDLNCL 694


>SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6)
          Length = 722

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 576 SLGGRKSFSLSHRPNESCPTIPRQSYTQTRTEK 478
           SLG + +       N+S P +P++S+T   +EK
Sbjct: 517 SLGDKSNIQFDDYSNKSLPPLPKESFTGLSSEK 549


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,789,617
Number of Sequences: 59808
Number of extensions: 476503
Number of successful extensions: 1234
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)