Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021236
         (839 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052015-1|AAK93439.1|  230|Drosophila melanogaster LD47387p pro...    38   0.013
AE014297-63|ABI31122.1|  230|Drosophila melanogaster CG1103-PB, ...    38   0.013
AE014297-62|AAF52142.2|  230|Drosophila melanogaster CG1103-PA, ...    38   0.013
BT010247-1|AAQ23565.1| 1508|Drosophila melanogaster RE40452p pro...    29   6.0  

>AY052015-1|AAK93439.1|  230|Drosophila melanogaster LD47387p
           protein.
          Length = 230

 Score = 38.3 bits (85), Expect = 0.013
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = +3

Query: 516 SLGTTHWVDARARKTSFPLKTDGRINFGLFEGHRELNVTYGRRNYDIS----VKAGNHPA 683
           S+ T HWV A  R+ +      G  NFGLF G+  LN  +G R   +     V+  N   
Sbjct: 31  SMTTNHWVRATPRRKNSS-DAKGEFNFGLFFGNYHLNPGFGVRTNSVDVYTFVRTENDDT 89

Query: 684 RRWAW 698
             W W
Sbjct: 90  SFWLW 94



 Score = 35.5 bits (78), Expect = 0.091
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
 Frame = +1

Query: 436 MKLNLFKRSMIFATFFGSCLCIAL-----TWDRWAR 528
           +K++L  R+++F+TFFGSCL I L     T + W R
Sbjct: 4   IKMSLHTRALVFSTFFGSCLAIGLLLVSMTTNHWVR 39


>AE014297-63|ABI31122.1|  230|Drosophila melanogaster CG1103-PB,
           isoform B protein.
          Length = 230

 Score = 38.3 bits (85), Expect = 0.013
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = +3

Query: 516 SLGTTHWVDARARKTSFPLKTDGRINFGLFEGHRELNVTYGRRNYDIS----VKAGNHPA 683
           S+ T HWV A  R+ +      G  NFGLF G+  LN  +G R   +     V+  N   
Sbjct: 31  SMTTNHWVRATPRRKNSS-DAKGEFNFGLFFGNYHLNPGFGVRTNSVDVYTFVRTENDDT 89

Query: 684 RRWAW 698
             W W
Sbjct: 90  SFWLW 94



 Score = 35.5 bits (78), Expect = 0.091
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
 Frame = +1

Query: 436 MKLNLFKRSMIFATFFGSCLCIAL-----TWDRWAR 528
           +K++L  R+++F+TFFGSCL I L     T + W R
Sbjct: 4   IKMSLHTRALVFSTFFGSCLAIGLLLVSMTTNHWVR 39


>AE014297-62|AAF52142.2|  230|Drosophila melanogaster CG1103-PA,
           isoform A protein.
          Length = 230

 Score = 38.3 bits (85), Expect = 0.013
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = +3

Query: 516 SLGTTHWVDARARKTSFPLKTDGRINFGLFEGHRELNVTYGRRNYDIS----VKAGNHPA 683
           S+ T HWV A  R+ +      G  NFGLF G+  LN  +G R   +     V+  N   
Sbjct: 31  SMTTNHWVRATPRRKNSS-DAKGEFNFGLFFGNYHLNPGFGVRTNSVDVYTFVRTENDDT 89

Query: 684 RRWAW 698
             W W
Sbjct: 90  SFWLW 94



 Score = 35.5 bits (78), Expect = 0.091
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
 Frame = +1

Query: 436 MKLNLFKRSMIFATFFGSCLCIAL-----TWDRWAR 528
           +K++L  R+++F+TFFGSCL I L     T + W R
Sbjct: 4   IKMSLHTRALVFSTFFGSCLAIGLLLVSMTTNHWVR 39


>BT010247-1|AAQ23565.1| 1508|Drosophila melanogaster RE40452p protein.
          Length = 1508

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 24/78 (30%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
 Frame = -3

Query: 825  PTCSQLGEVWGNISCGPADPNPLIHTTRPNRARLH-PTAPLYHTTPSDELGDYRLSRLYH 649
            P    +G V G+    PA P P   +       LH  T P +H T     G    S   +
Sbjct: 1402 PCPVDVGSVDGHYEFDPATPTPSASSMLREDLNLHIDTHPYHHHTLGPLSGSLLHSHAPY 1461

Query: 648  NSSGRK*RSTPCG-PRRG 598
                RK RS P   PR G
Sbjct: 1462 GGGARKQRSLPAHLPRYG 1479


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,360,195
Number of Sequences: 53049
Number of extensions: 695384
Number of successful extensions: 1776
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1776
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4003789140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)