Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021236
         (839 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039716-5|AAB96740.1|  488|Caenorhabditis elegans Hypothetical ...    33   0.33 
U41011-10|AAY86268.1|   77|Caenorhabditis elegans Hypothetical p...    32   0.58 
AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical...    29   5.4  
AC024790-3|AAF60637.1|  446|Caenorhabditis elegans Hypothetical ...    29   5.4  

>AF039716-5|AAB96740.1|  488|Caenorhabditis elegans Hypothetical
           protein W03G9.5 protein.
          Length = 488

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = +3

Query: 447 SIQEVHDIRYVFRFVSVYSFDVGSLGT 527
           SI+E+HDI +V R V   +F +G+LGT
Sbjct: 129 SIKEIHDIGFVHRDVKPANFAIGALGT 155


>U41011-10|AAY86268.1|   77|Caenorhabditis elegans Hypothetical
           protein D2024.10 protein.
          Length = 77

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -3

Query: 534 NESCPTIPRQSYTQTRTEKRSEYHGPLE*IELHFFFKSIHFSR 406
           ++ C +I R S T T+ E+   ++G +   E+  FFK+ HF++
Sbjct: 17  SDFCKSIERTSGTPTKEEENLLHNGTILNFEVFNFFKAFHFNK 59


>AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical
           protein Y48B6A.11 protein.
          Length = 922

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = -3

Query: 537 PNESCPTIPRQSYTQTRTEKRSEYHGPLE*IELHFFFKSIHFSRNSY*C 391
           PN S   IP+  +++T T+K  ++H P   ++      + H + +S+ C
Sbjct: 556 PNSSRRLIPKWCFSKTDTKKHEDHHEPPPPLDRLLTCSNCHVTVHSHCC 604


>AC024790-3|AAF60637.1|  446|Caenorhabditis elegans Hypothetical
           protein Y47D7A.6 protein.
          Length = 446

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 747 TRPNRARLHPTAPLYHTTPSDELGDYRLSRLY 652
           T P  A  +PT   Y TTPS     Y++S+ Y
Sbjct: 267 TYPTEAPTYPTTASYETTPSYPEPSYQVSKKY 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,568,119
Number of Sequences: 27780
Number of extensions: 354658
Number of successful extensions: 901
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)