Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021236
         (839 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   2.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.6  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   8.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   8.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   8.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   8.1  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 581 RQNQLWPLRGPQGVERHLR 637
           R+N  +PLR PQ V  H R
Sbjct: 118 RRNSRYPLRPPQEVISHYR 136


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -2

Query: 628 TFNSLWPSKRPKLILPSVFRGKEVFLALASTQ*VVPNDPTSKLYTDTNRKT 476
           TFNS+W + R   + P  F G      L   +  V   P + L +  N +T
Sbjct: 125 TFNSVWGASRFLELAPDSFLGLRELHTLEIVESNVQALPVNSLCSLDNLQT 175


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 789 ISCGPADPNPLIHTT 745
           ++C    PNP  HTT
Sbjct: 425 VTCTNCGPNPCTHTT 439


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 789 ISCGPADPNPLIHTT 745
           ++C    PNP  HTT
Sbjct: 411 VTCTNCGPNPCTHTT 425


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 789 ISCGPADPNPLIHTT 745
           ++C    PNP  HTT
Sbjct: 445 VTCTNCGPNPCTHTT 459


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 789 ISCGPADPNPLIHTT 745
           ++C    PNP  HTT
Sbjct: 394 VTCTNCGPNPCTHTT 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,819
Number of Sequences: 438
Number of extensions: 4187
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)