Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021236
         (839 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29870.1 68414.m03651 tRNA synthetase class II (G, H, P and S...    33   0.24 
At2g42640.1 68415.m05277 expressed protein weak similarity to ED...    28   8.9  

>At1g29870.1 68414.m03651 tRNA synthetase class II (G, H, P and S)
           family protein similar to SP|O23627 Glycyl-tRNA
           synthetase (EC 6.1.1.14) (Glycine--tRNA ligase) (GlyRS)
           {Arabidopsis thaliana}; contains Pfam profile PF00587:
           tRNA synthetase class II core domain (G, H, P, S and T);
           contains non-consensus TA acceptor splice site at intron
           4
          Length = 463

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
 Frame = -3

Query: 822 TCSQLGEVWGNISCGPADPNPLIHTTRPNRARLHPT-----APLYHTTPSDELGDYRLSR 658
           +  +LG VW + S  P   NPL H  RP       +     + + +  P    G +   +
Sbjct: 190 SAEELGGVWNHCSTAPVTKNPLSHPPRPFNLMFQTSFGASGSLIGYLRPETAQGSFCNFK 249

Query: 657 LYHNSSGRK 631
            Y+N +GRK
Sbjct: 250 DYYNLNGRK 258


>At2g42640.1 68415.m05277 expressed protein weak similarity to EDR1
           [Hordeum vulgare] GI:11127923
          Length = 396

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 834 TAQPTCS-QLGEVWGNISCGPADPNPLIHTTRPN 736
           T++P C   L E       GP++PNP   T RP+
Sbjct: 66  TSEPVCQGSLVETSNTDDAGPSEPNPPSPTLRPS 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,464,047
Number of Sequences: 28952
Number of extensions: 325514
Number of successful extensions: 852
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)