Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021235
         (816 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   2.9  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    23   2.9  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   2.9  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   6.7  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   6.7  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 417 PPDKRRWAMRYTWNPQNNPVLNTNLKL 497
           PP  +     +   PQ+NP++NT   L
Sbjct: 57  PPSPQEVYYHHQTIPQDNPIINTETGL 83


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 417 PPDKRRWAMRYTWNPQNNPVLNTNLKL 497
           PP  +     +   PQ+NP++NT   L
Sbjct: 57  PPSPQEVYYHHQTIPQDNPIINTETGL 83


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 417 PPDKRRWAMRYTWNPQNNPVLNTNLKL 497
           PP  +     +   PQ+NP++NT   L
Sbjct: 57  PPSPQEVYYHHQTIPQDNPIINTETGL 83


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 714 QKRTPSVNNEKRKA 755
           Q  TP+ NN+KRK+
Sbjct: 322 QNATPANNNDKRKS 335


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 714 QKRTPSVNNEKRKA 755
           Q  TP+ NN+KRK+
Sbjct: 322 QNATPANNNDKRKS 335


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,716
Number of Sequences: 336
Number of extensions: 2678
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22310335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)