Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021235
(816 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 65 1e-11
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 47 3e-06
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 42 1e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 42 1e-04
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 40 6e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 40 6e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 40 6e-04
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 39 7e-04
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 39 0.001
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 38 0.001
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 38 0.002
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 36 0.005
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 36 0.009
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 35 0.016
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 34 0.021
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 34 0.028
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 33 0.037
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 33 0.048
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 33 0.048
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 32 0.085
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 31 0.15
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.60
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 29 0.79
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 28 1.8
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 28 1.8
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 26 5.6
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 26 5.6
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 9.7
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 64.9 bits (151), Expect = 1e-11
Identities = 35/90 (38%), Positives = 47/90 (52%)
Frame = +3
Query: 159 ENKKKETCKRACLFGTYPTWIL*ASNDTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHD 338
ENK + K G P FG V R+ R+R+TG SK YAF+EF
Sbjct: 96 ENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFES 155
Query: 339 PAVAQIVAETMNNYLMGKRLIKAAYIPPDK 428
VA +VAETM+NYL+ +L++ IP D+
Sbjct: 156 LDVANVVAETMHNYLLYGKLLQCKVIPEDQ 185
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 47.2 bits (107), Expect = 3e-06
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPP 422
I + G V + +++ +G+ KGY F E+HDPA A +NNY G R ++ +
Sbjct: 24 IFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNLNNYDAGTRRLRVDFPTA 83
Query: 423 DKRR 434
D+ R
Sbjct: 84 DQIR 87
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPP 422
I G V +++ TG KGY F EF D + +NN +G R I+ +
Sbjct: 26 IFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKIRVEFPSN 85
Query: 423 DKRR 434
D RR
Sbjct: 86 DPRR 89
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +1
Query: 190 LVYLGHIPHGFYEHQMTQYFSHL 258
+V++G+IP+ E QMT+ F+ +
Sbjct: 8 VVFVGNIPYDVSEQQMTEIFNQV 30
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 41.5 bits (93), Expect = 1e-04
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK----AA 410
+ FG + ++R + TG+SKG+AF+++ D + + M N + RL++ A+
Sbjct: 50 VFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRVDHVAS 109
Query: 411 YIPPDKRR 434
Y P K +
Sbjct: 110 YKVPQKEK 117
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 39.5 bits (88), Expect = 6e-04
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Frame = +3
Query: 93 NYKEEKNASEGSDPRHP*STRRENKKKETCKRACLFGTYPTWIL*ASNDTI---LQSFGG 263
NY E ++A GS E + +F W ++D++ + FG
Sbjct: 131 NYNENQSALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWE--TTDDSLRDYFEQFGE 188
Query: 264 VSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPDKR 431
V +C V+R TGRS+G+ F+ F +P V + ++L GK + IP +++
Sbjct: 189 VLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM-SKEHHLDGKIIDPKRAIPREEQ 243
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQ 353
FG V + ++ + TGR +G+ FV + + + +
Sbjct: 270 FGRVLDATLMMDKDTGRPRGFGFVTYENESAVE 302
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 39.5 bits (88), Expect = 6e-04
Identities = 26/77 (33%), Positives = 37/77 (48%)
Frame = +3
Query: 147 STRRENKKKETCKRACLFGTYPTWIL*ASNDTILQSFGGVSNCRVIRSRRTGRSKGYAFV 326
S+R EN ++T G W+ A + + G ++IR+R TG + GY FV
Sbjct: 83 SSRDENVYQKT---TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFV 139
Query: 327 EFHDPAVAQIVAETMNN 377
EF P A A +MNN
Sbjct: 140 EFASPHEAS-SAMSMNN 155
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/59 (22%), Positives = 24/59 (40%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPDKR 431
+ + +++ +T S+GY FV F D + M + G R I+ P +
Sbjct: 210 YNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSK 268
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 39.5 bits (88), Expect = 6e-04
Identities = 15/60 (25%), Positives = 32/60 (53%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPP 422
+ + FGG+ + + + TGR+KG+AFV ++D A + ++ Y +++ + P
Sbjct: 221 LFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDGYGWNNLILRCEFSKP 280
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 39.1 bits (87), Expect = 7e-04
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +3
Query: 237 DTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 413
+ + FG + +C + T SKGY FV F P A T+N L GK+ + Y
Sbjct: 438 EELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFVNY 496
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 38.7 bits (86), Expect = 0.001
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 237 DTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRL-IKAAY 413
+ + FG V N + RRTG KGYA +E+ AQ + N L+ ++L + A+
Sbjct: 27 EDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNLSLLDEKLEVDFAF 86
Query: 414 IPPDKR 431
+ P +R
Sbjct: 87 LEPPER 92
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 237 DTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM 386
+ I FG + +C+VIR + TG S YAF+EF + + M N L+
Sbjct: 261 ELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLI 310
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 37.5 bits (83), Expect = 0.002
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +3
Query: 105 EKNASEGSDPRHP*STRRENKKKETCKRACLF-GTYPTWIL*ASNDTILQSFGGVSNCRV 281
+K+ S+P H + K K ++ LF G P + + G V + R+
Sbjct: 64 DKDKHSVSNPPHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRI 123
Query: 282 IRSRRTGRSKGYAFVEFHDP 341
+ +GR KGYAFVEF +P
Sbjct: 124 PTDKTSGRQKGYAFVEFINP 143
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 36.3 bits (80), Expect = 0.005
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQ 353
+ +G + RVI ++GRSKGY +V+F P A+
Sbjct: 284 EEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAK 318
Score = 31.9 bits (69), Expect = 0.11
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +3
Query: 228 ASNDTILQSFGGVSNCRVIR---SRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGK 392
A+ D + +FGG + + IR ++GR KG+ +V F D A+ E +++ G+
Sbjct: 377 ATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGR 434
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 35.5 bits (78), Expect = 0.009
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +3
Query: 258 GGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAETMNNYLMGKRLI 401
G V + +++R + +GRSKG A+VEF H+ +V +A L GKRL+
Sbjct: 264 GPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA------LSGKRLL 306
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 34.7 bits (76), Expect = 0.016
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKR 395
+ S G V++ RV R T RS GYA+V FH+ + + +N L+ R
Sbjct: 99 LFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGR 149
Score = 31.9 bits (69), Expect = 0.11
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 228 ASNDTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 401
A +DT +FG + +C+V G +KGY FV F A E +N L+ + +
Sbjct: 183 ALHDTF-SAFGKILSCKVAVDE-LGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKV 238
Score = 29.5 bits (63), Expect = 0.60
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVA-QIVAETMNNYLMGKRLIKAAYIPPDK 428
+FG +++ +++ + G+SKG+ FV + P A + V E L GK L A +
Sbjct: 386 AFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEV 444
Query: 429 RR 434
RR
Sbjct: 445 RR 446
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 34.3 bits (75), Expect = 0.021
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM-GKRLI 401
+G + RV+R++ TG+S GYAFV F ++ + ++ G+R++
Sbjct: 123 YGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIV 172
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 33.9 bits (74), Expect = 0.028
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 237 DTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 401
+ + FG + + + +G SKGY FV F A +T+N ++GK+ I
Sbjct: 401 EDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRI 455
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 33.5 bits (73), Expect = 0.037
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Frame = +3
Query: 180 CKRACLFGTYPTWIL*ASNDTILQSFGGVSNCRVIRSR----RTGRSKGYAFVEFHDPAV 347
C G P W S+ +L F + + VIR+R TGRSKG+ V+F +
Sbjct: 278 CSDCIYVGNLP-WA--TSDRNLLDLFTDIGS--VIRARIAYEPTGRSKGFGVVQFENEND 332
Query: 348 AQIVAETMNNYLMGKRLIKAAY 413
A E +N Y G R ++ +Y
Sbjct: 333 AASSIEKLNGYRYGGRPLQLSY 354
Score = 29.9 bits (64), Expect = 0.45
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +3
Query: 258 GGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPDKRR 434
G V NC ++ + G SKG A +E+ A+ +T++N RL+ YI D+ +
Sbjct: 90 GNVLNCEIL-NLPNGLSKGCAIIEYSTAEEARTAIKTLSNQKFMGRLV---YIREDREQ 144
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 33.1 bits (72), Expect = 0.048
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 300 GRSKGYAFVEFHDPAVAQIVAETMNNY-LMGKRL 398
G +G AF F+ P AQ+V +T+N Y + G+RL
Sbjct: 240 GIFRGLAFANFYRPEEAQVVVQTLNGYEINGRRL 273
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 33.1 bits (72), Expect = 0.048
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 300 GRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 413
GRSKGY FV + A E MNN + + I +Y
Sbjct: 137 GRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSY 174
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 32.3 bits (70), Expect = 0.085
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 404
S G V+ ++ + TG KG+A++EF +P++ A +N ++ +R +K
Sbjct: 77 SCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVP-NALLLNGSMLHERPLK 126
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 31.5 bits (68), Expect = 0.15
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 300 GRSKGYAFVEFHDPAVAQIVAETMNNY-LMGKRL 398
G +G AF FH P A+ V + +N Y + G+RL
Sbjct: 270 GVFRGLAFANFHSPEEAKTVVQVLNGYEITGRRL 303
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 29.5 bits (63), Expect = 0.60
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAA 410
FG + + + R + + YAFVEF +P A+ E MN ++ R I+ +
Sbjct: 29 FGEIISVALHRKEKAV-DRSYAFVEFDEPEDAKEAMENMNYSILCDRCIRVS 79
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 29.1 bits (62), Expect = 0.79
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN 377
I FG V++ R++R T S+G+ F+ F A + +N+
Sbjct: 120 IFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNS 164
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 27.9 bits (59), Expect = 1.8
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHD 338
FG + + ++T KG+A+++FHD
Sbjct: 346 FGQLEQVHMPIDKKTNNPKGFAYIDFHD 373
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 255 FG-GVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGK 392
FG GV++ R++ T RS+G+ +VEF LMG+
Sbjct: 114 FGEGVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGEDLMGR 160
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 258 GGVSNCRVIRSRRTGRSKGYAFVEFHD 338
G + R++ TG+ KG+ FV+F D
Sbjct: 252 GQIRRVRLMTFEDTGKCKGFGFVDFPD 278
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +3
Query: 705 EAVQKRTPSVNNEKRKACINLSQVIHSRMF 794
EA++K +PS+N+E+ + NL + S++F
Sbjct: 890 EALKKNSPSLNSEEFEHLSNLYRDFRSKLF 919
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 312 GYAFVEFHDPAVAQIVAET 368
G AF+ F A AQIVA+T
Sbjct: 388 GQAFITFESMATAQIVAQT 406
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,754,647
Number of Sequences: 5004
Number of extensions: 45721
Number of successful extensions: 150
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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