Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021235
(816 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 60 2e-09
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 43 3e-04
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 42 5e-04
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 41 0.001
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 40 0.002
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 40 0.002
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.010
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 37 0.017
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.017
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.022
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 35 0.069
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 35 0.091
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.21
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 33 0.28
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 32 0.48
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.64
SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23) 31 0.84
SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 31 1.5
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 31 1.5
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 30 2.0
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 30 2.0
SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 30 2.6
SB_44751| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19) 29 4.5
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 29 4.5
SB_3721| Best HMM Match : RRM_1 (HMM E-Value=3.1) 29 4.5
SB_57638| Best HMM Match : F5_F8_type_C (HMM E-Value=1.7e-11) 29 6.0
SB_41312| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 60.5 bits (140), Expect = 2e-09
Identities = 28/52 (53%), Positives = 39/52 (75%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 404
+ FG V+ R+ RS+++ RSKGYAFVEF VA+I A+TM+NY+M RL+K
Sbjct: 119 EQFGTVNRIRLSRSKKSARSKGYAFVEFACDEVAKIAADTMHNYMMFGRLLK 170
Score = 39.1 bits (87), Expect = 0.004
Identities = 12/21 (57%), Positives = 20/21 (95%)
Frame = +1
Query: 187 GLVYLGHIPHGFYEHQMTQYF 249
G++YLGHIPHGF+E+++ ++F
Sbjct: 98 GVIYLGHIPHGFFENEIKKFF 118
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 47.6 bits (108), Expect = 1e-05
Identities = 21/60 (35%), Positives = 34/60 (56%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPP 422
I + G V++C++IR R TG+S GYAFV + +P A MN + + +K ++ P
Sbjct: 46 IFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFARP 105
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 46.0 bits (104), Expect = 4e-05
Identities = 21/80 (26%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPP 422
+ ++ ++NC+++R + +G S G+ FV+++ AQ + +N + +G +++K A+ P
Sbjct: 66 MFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQKAIDKLNGFTIGNKVLKVAFSRP 125
Query: 423 --DKRRWAMRYTWN-PQNNP 473
D + A Y N P+ P
Sbjct: 126 GGDNTKGANLYVCNIPKQLP 145
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 404
+ + FG V + ++I T RSKGY FV+F + A+ E MN + + R +K
Sbjct: 261 VFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQMNGFELAGRPLK 314
Score = 35.1 bits (77), Expect = 0.069
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 258 GGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMG 389
G VS+ R+I R + RSKG A++EF D + + L+G
Sbjct: 170 GQVSDVRIISDRNSRRSKGIAYIEFTDKSAVPLAIGLSGQKLLG 213
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 42.3 bits (95), Expect = 5e-04
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +3
Query: 240 TILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKA--AY 413
++ ++FG V +C + + TG+ KGY F+E+ + A +MN + +G + ++ A
Sbjct: 217 SVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASMNLFDLGGQFLRVGRAI 276
Query: 414 IPPDKRRWAMRYTWNPQNNP 473
PP A T P P
Sbjct: 277 TPPTSSAMAAINTTPPGTLP 296
Score = 38.7 bits (86), Expect = 0.006
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +3
Query: 240 TILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 404
T FG ++ + + KG+AFVE+ P AQ+ E MN L+G R IK
Sbjct: 120 TAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALEQMNGVLLGGRNIK 174
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +3
Query: 237 DTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 401
+ I FG + +C VIR ++TG S YAF+EF + M+N L+ R I
Sbjct: 137 EIIFSRFGTILSCEVIRDQKTGESLQYAFIEFEKDEDCERAYFKMDNVLIDDRRI 191
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMG-KRLI 401
+L SFG + +++ TG SKGYAF E+ D + + + +N +G K+LI
Sbjct: 692 LLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQGLNGMQLGDKKLI 745
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPP 422
I G V + R++ R TG+ KGY F E+ D A +N Y + R ++
Sbjct: 44 IFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRNLNGYELNGRALRVDSAAS 103
Query: 423 DKRR---WAMRYTWNPQNNP 473
+K + +M T P+ +P
Sbjct: 104 EKNKEEIKSMEMTARPEVSP 123
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = +3
Query: 231 SNDTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAA 410
+ D++ +F G SN +VI R +G S+G+ FV++ D A+ V M + R ++
Sbjct: 301 TTDSLGAAFEGCSNAKVIFDRESGESRGFGFVDYDDVETAKKVLSEMAGAEVDGRQVRLD 360
Query: 411 YIPP 422
+ P
Sbjct: 361 FASP 364
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 401
+ FG + C V+R T RS+G+ F+ F DP +V + L GK+++
Sbjct: 129 EKFGELKECVVMRDPVTKRSRGFGFLTFKDPKAVDVVLNSGAQELDGKKMV 179
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 37.9 bits (84), Expect = 0.010
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYL 383
+SFG + +++R +T +KGY +V+FH + A + E + L
Sbjct: 74 ESFGDIEYVQIVRDHKTRENKGYGYVKFHKSSTAAMALENCDKSL 118
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 37.1 bits (82), Expect = 0.017
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHD-PAVAQIVAETMNN----YLMGKRLIKA 407
+ + FG ++ C+V+ T SKG AFV++ +V Q +A T + +L G RL
Sbjct: 435 LFKQFGDIAYCKVVVDHLTQHSKGSAFVKYRSAESVTQCLAATDEDSEGLFLDGNRLQVD 494
Query: 408 AYIPPDKRRWAMRYTWNPQNNPVLNTNLKLKKQ 506
+ P K R + +P NL L ++
Sbjct: 495 LAVTPGKLEQMSRQQKEERRDPKDKRNLYLARE 527
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 37.1 bits (82), Expect = 0.017
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN-YLMGKRL-IKAAYI 416
+ +G + N V RRTG KGYA VE+ AQ E +N ++G+ + + A+I
Sbjct: 312 LFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEALNGAEMLGQNISVDWAFI 371
Query: 417 --PPDKRRWAMRYTWNPQNNPVLN 482
P K R T P + + N
Sbjct: 372 RGPSKKSRSLQAVTSLPLSKRIAN 395
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 36.7 bits (81), Expect = 0.022
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 404
+G + N ++R ++TG+ KG+ F+ + D + + N +G R I+
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNGIKLGGRTIR 51
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 35.1 bits (77), Expect = 0.069
Identities = 23/72 (31%), Positives = 34/72 (47%)
Frame = +3
Query: 162 NKKKETCKRACLFGTYPTWIL*ASNDTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDP 341
N K +R+ G P I + + G V + R+IR R+TG KG+ +V F +
Sbjct: 48 NDKAHDHQRSVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLF-ES 106
Query: 342 AVAQIVAETMNN 377
A + A MNN
Sbjct: 107 KDAVVFALKMNN 118
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 34.7 bits (76), Expect = 0.091
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 4/129 (3%)
Frame = +3
Query: 99 KEEKNASEGSDPRHP*STRRENKKKETCKRACLFGTYPTWIL*ASN-DTILQSFGGVSNC 275
++ K +S S R + R K+ T K L+ + T + + I +G V
Sbjct: 1127 RKGKRSSSSSSSRSRSRSPRRRKRSPTPKPTKLYVAHLTRNVNKDHVQEIFSVYGRVKTV 1186
Query: 276 RVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN-NYLMGKRLIKAAYIPPDKR--RWAMR 446
+ R S+G+A+VE+ DP + + M+ + G+ + + +PP R R A R
Sbjct: 1187 DLPTDRTNNLSRGFAYVEYVDPEECEKALKHMDGGQIDGQEIAVQSVLPPRPRDVRPAYR 1246
Query: 447 YTWNPQNNP 473
P+ P
Sbjct: 1247 RPSPPRRRP 1255
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 34.3 bits (75), Expect = 0.12
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEF----HDPAVAQIVAETMNNYLMGKRLIKAA 410
++ +G + ++RS TG SKGY FVE+ + Q + T + Y+ G R+++ A
Sbjct: 132 LMSPYGNIERLFLVRSEVTGDSKGYGFVEYATRENAMQAKQQLLNTASKYI-GGRILRVA 190
Query: 411 Y 413
+
Sbjct: 191 F 191
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 34.3 bits (75), Expect = 0.12
Identities = 21/79 (26%), Positives = 33/79 (41%)
Frame = +3
Query: 237 DTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYI 416
+ + G V R++ + R G+ KGY +VE+ + A T++ + R I A
Sbjct: 188 EELFSKHGVVKQVRLV-TNRAGKPKGYGYVEYEQESSASTAVLTLDKTEVKGRTISVALS 246
Query: 417 PPDKRRWAMRYTWNPQNNP 473
P RR R P P
Sbjct: 247 NPPTRRGPPRQEHPPPPPP 265
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 33.5 bits (73), Expect = 0.21
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 276 RVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 413
+++R TG SKG+AF+ F + E MN + R I +Y
Sbjct: 131 KIMRDSDTGNSKGFAFINFASFDASDAAIEAMNGQYLCNRPITVSY 176
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 33.5 bits (73), Expect = 0.21
Identities = 20/74 (27%), Positives = 31/74 (41%)
Frame = +3
Query: 183 KRACLFGTYPTWIL*ASNDTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVA 362
K G P + + + + +G V ++R + T S+G AF+ F D AQ
Sbjct: 9 KSTVYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAV 68
Query: 363 ETMNNYLMGKRLIK 404
+N M R IK
Sbjct: 69 AAVNKKQMFGRTIK 82
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 33.1 bits (72), Expect = 0.28
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRL-IKAAYI---PP 422
FG + VI+ R T +SKGY FV A++ + + G++ + AY+ P
Sbjct: 33 FGEIREAVVIKDRVTKKSKGYGFVTMATSDAAELACKNKRPMIEGRQANVNLAYLGAKPK 92
Query: 423 DKRRWAMRYT 452
R MR T
Sbjct: 93 PTRGLCMRLT 102
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 32.3 bits (70), Expect = 0.48
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +3
Query: 276 RVIRSRRTGRSKGYAFVEFHDP 341
+++R +++ +SKGY FV F DP
Sbjct: 247 KIVRDKKSNKSKGYGFVSFKDP 268
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 31.9 bits (69), Expect = 0.64
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN-NYLMGKRLI 401
+ + +G + + + R R T S+G+AFV F++ A+ + M+ LM ++ +
Sbjct: 35 VFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDAMDCMDATCLMAEKFV 88
>SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23)
Length = 44
Score = 31.5 bits (68), Expect = 0.84
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 374
+G + N ++R ++TG+ KG+ F+ + D + + N
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFN 41
>SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 31.5 bits (68), Expect = 0.84
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +3
Query: 258 GGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 401
G + N R+ + TG+ + + FVEF P +E ++ + R I
Sbjct: 481 GPLENVRIPTDKNTGQQRSFGFVEFSSPVSVHYASELLDGIRLYDRAI 528
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +3
Query: 261 GVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAA 410
GV ++R + +GRS+G+ FV E MN +G R I A
Sbjct: 33 GVEKVDILRDKESGRSRGFGFVLLQSADQIAPAIEKMNQSSVGGRNITVA 82
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/62 (25%), Positives = 34/62 (54%)
Frame = +3
Query: 168 KKETCKRACLFGTYPTWIL*ASNDTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAV 347
K+E +R + I +S +++ +G + + +IR++ TG+SKG+ +V + +
Sbjct: 57 KEEHDQRTIYIRDFRPDIRKSSLESVFGPYGAIEDLSIIRTQ-TGKSKGFGYVTYENAES 115
Query: 348 AQ 353
AQ
Sbjct: 116 AQ 117
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 374
+ FG V + R + G KG+AF+EF A+ V + N
Sbjct: 107 VFSEFGKVLYVSLPRFKHNGEIKGFAFIEFESKQQAEHVVQMFN 150
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 30.3 bits (65), Expect = 2.0
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDP-AVAQIVAETMNNYLMGKRLIKAAYIPPDKR 431
+G V+ ++ R TG+SKG V+ P V +I+ E + +++GK ++ +R
Sbjct: 342 YGQVAKVHILTDRETGKSKGCGVVKLRHPGTVNKILEEPV--HVIGKSQVRLR-----RR 394
Query: 432 RWAMRYTWNPQNNPVLNTNLKL 497
+R T N + ++N +L L
Sbjct: 395 GLKIRPTRNTDDLSLMNFSLSL 416
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQ-IVAETMN 374
+ +G + + + I + T KGY FV+F P AQ VA +N
Sbjct: 119 LCHKYGTIISTKAILDKDTNLCKGYGFVDFESPISAQKAVAALVN 163
>SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1182
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 237 DTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 371
+T +FG V++ R++ RRTG +KG A + D + V + +
Sbjct: 1083 ETFFSNFGPVADVRIVCDRRTGLNKGDAQPKCRDELAKRTVLKNV 1127
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVA 350
+ +G V +++R + G SKGYAF+ F VA
Sbjct: 29 EEYGVVKESKIVRDKH-GVSKGYAFITFESQEVA 61
>SB_44751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 842
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 477 RQDCSEGSMCISWPIFVYQVVCKQLLSIFS 388
R+DC GS C P + V CK LLS ++
Sbjct: 595 RRDCPAGSFCHIHPTDRFAVCCKDLLSSYT 624
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 291 RRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIP 419
RR KG+ FV F DPA + V + L GK + +P
Sbjct: 136 RRARMLKGFGFVTFRDPATIESVLAKKPHILDGKTIDPKPAVP 178
>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
Length = 623
Score = 29.1 bits (62), Expect = 4.5
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 1/96 (1%)
Frame = +3
Query: 108 KNASEGSDPRHP*STRRENKKKETCKRACLFGTYPTWIL*ASNDTILQSFGGVSNCRV-I 284
KN SD P T + +K K T C P A + IL+ F + +
Sbjct: 142 KNPDGSSDVDEPQETPQPDKPKPTTPWTCKMRGLP---FKAKDKHILEFFSPLKPVAIRF 198
Query: 285 RSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGK 392
+ G+ G AFV+F + + + +YL G+
Sbjct: 199 VMNKKGQPSGCAFVDFSSKSDLEKALKRNKDYLQGR 234
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 300 GRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKA 407
G+SKG+ FV F P A+ +N +G R + A
Sbjct: 146 GKSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRLWA 181
>SB_3721| Best HMM Match : RRM_1 (HMM E-Value=3.1)
Length = 51
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 300 GRSKGYAFVEFHDPAVAQ 353
GRSKGYA+VEF++ + Q
Sbjct: 3 GRSKGYAYVEFNNESTVQ 20
>SB_57638| Best HMM Match : F5_F8_type_C (HMM E-Value=1.7e-11)
Length = 502
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -1
Query: 447 ISWPIFVYQVVCKQLLSIFSP*DNYSWSQQQFVRQQDHETL 325
+ W +FV + LS+FS WS + F R ++ + L
Sbjct: 1 MKWWVFVICTITTNFLSVFSKTHEVEWSTEFFQRSKNEKVL 41
>SB_41312| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 96 YKEEKNASEGSDPR-HP*STRRENKKKETCKRA 191
Y+EE++ASEG + HP R+ +K+ T A
Sbjct: 110 YEEEESASEGQEANPHPPRGRKRKRKRPTASTA 142
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,822,389
Number of Sequences: 59808
Number of extensions: 322788
Number of successful extensions: 631
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -