Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021235
(816 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 61 1e-09
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 47 2e-05
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 46 2e-05
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 46 3e-05
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 46 3e-05
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 46 3e-05
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 46 3e-05
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 44 2e-04
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 42 4e-04
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 42 4e-04
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 41 0.001
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 40 0.003
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 40 0.003
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 39 0.004
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 39 0.004
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 38 0.011
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 38 0.011
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 38 0.011
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 37 0.015
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 37 0.015
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 37 0.015
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 37 0.020
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 37 0.020
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 36 0.035
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 36 0.035
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 36 0.035
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 36 0.035
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 36 0.046
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 35 0.061
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 35 0.061
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 35 0.061
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 33 0.18
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 33 0.32
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 33 0.32
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 33 0.32
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 33 0.32
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 33 0.32
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 33 0.32
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.43
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.43
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 32 0.56
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 32 0.56
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 31 0.75
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 30 1.7
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 30 1.7
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 30 1.7
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 30 1.7
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 30 2.3
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 29 3.0
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 29 3.0
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 29 3.0
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 29 3.0
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 29 3.0
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 29 5.3
Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical pr... 29 5.3
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 29 5.3
AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin pr... 29 5.3
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 29 5.3
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 28 9.2
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 28 9.2
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 28 9.2
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 60.9 bits (141), Expect = 1e-09
Identities = 30/67 (44%), Positives = 43/67 (64%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPDK 428
+ FG V RV R+RRTG KG+A+V F + AVA+I AE+MN YLM ++ + + P+
Sbjct: 53 RQFGNVLRIRVARNRRTGNHKGWAYVGFDNKAVAEIAAESMNGYLMFEQRLGCTVMKPEL 112
Query: 429 RRWAMRY 449
AMR+
Sbjct: 113 IPKAMRH 119
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +3
Query: 231 SNDTILQSF---GGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 401
S DTI F G V + +++ R TG+ KGY F+EF D A++ +N Y + R++
Sbjct: 30 SEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNLNGYELSGRIL 89
Query: 402 K 404
+
Sbjct: 90 R 90
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +3
Query: 258 GGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 413
G V+N R++ R TGR +G+AFVEF + A AQ E +N R ++ Y
Sbjct: 30 GHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNY 81
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/52 (42%), Positives = 30/52 (57%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 404
Q FG VS+ +VIR T +SKGY FV + A+ E MN +G+R I+
Sbjct: 43 QPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIR 94
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 413
SFG ++ R+ + + GYAFV+F + A MNN +G +L++ ++
Sbjct: 149 SFGRITEVRIFKMQ------GYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSW 196
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/52 (42%), Positives = 30/52 (57%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 404
Q FG VS+ +VIR T +SKGY FV + A+ E MN +G+R I+
Sbjct: 53 QPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIR 104
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 413
SFG ++ R+ + + GYAFV+F + A MNN +G +L++ ++
Sbjct: 159 SFGRITEVRIFKMQ------GYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSW 206
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/52 (42%), Positives = 30/52 (57%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 404
Q FG VS+ +VIR T +SKGY FV + A+ E MN +G+R I+
Sbjct: 156 QPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIR 207
Score = 32.3 bits (70), Expect = 0.43
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +3
Query: 240 TILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 404
T+ G V+ +VI G + YAFVEF D A +TMN L+ R +K
Sbjct: 64 TLFNQIGSVTKTKVIFD---GSNDPYAFVEFSDHGQASQALQTMNKRLLLDREMK 115
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 413
SFG ++ R+ + + GYAFV+F + A MNN +G +L++ ++
Sbjct: 262 SFGRITEVRIFKMQ------GYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSW 309
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/52 (42%), Positives = 30/52 (57%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 404
Q FG VS+ +VIR T +SKGY FV + A+ E MN +G+R I+
Sbjct: 124 QPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIR 175
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 413
SFG ++ R+ + + GYAFV+F + A MNN +G +L++ ++
Sbjct: 230 SFGRITEVRIFKMQ------GYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSW 277
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +3
Query: 237 DTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 401
+ I FG ++NC ++R RR+G S YAF+EF + + M+N L+ R I
Sbjct: 258 EIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRI 312
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = +3
Query: 258 GGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 404
G VSN R++ R TGR +G+AFVEF + A AQ + N R ++
Sbjct: 28 GNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALR 76
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +3
Query: 237 DTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 401
+ I FG ++NC ++R RR+G S YAF+EF + + M+N L+ R I
Sbjct: 258 EIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRI 312
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +3
Query: 237 DTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 401
+ I FG ++NC ++R RR+G S YAF+EF + + M+N L+ R I
Sbjct: 189 EIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRI 243
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 374
S G ++N R++ R TGR +G+AF+EF + AQ E MN
Sbjct: 27 SIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMN 67
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 404
FG VS +VIR +T +SKGY FV F + A+ MN +GKR ++
Sbjct: 158 FGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAVR 207
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 42.3 bits (95), Expect = 4e-04
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYI 416
+ +G V N +IR + TG+SKG+AF+ + D + + N + KR+I+ ++
Sbjct: 57 VFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNFNGISLHKRMIRVDHV 114
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 41.1 bits (92), Expect = 0.001
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Frame = +3
Query: 99 KEEKNASEGSDPRHP*STRRENKKKETCKRACLF-GTYPTWIL*ASNDTILQSFGGVSNC 275
++E + + +PR P R K ET + +F G + I FG VS
Sbjct: 105 EKEMHVTWAFEPREPGENR---SKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEA 161
Query: 276 RVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 404
++IR T + KGY FV + A+ + MN +G+R I+
Sbjct: 162 KIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIR 204
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 282 IRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 413
I RT + +GYAFV+F A MNN +G ++++ ++
Sbjct: 281 INEVRTFKIQGYAFVKFETKESAARAIVQMNNADIGGQIVRCSW 324
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/64 (29%), Positives = 35/64 (54%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPP 422
+ + +G VS +V+ ++TG KG+A VEF P A ++ Y+ R++ +P
Sbjct: 298 LFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSALDGYVFKGRMMH--ILPG 355
Query: 423 DKRR 434
D++R
Sbjct: 356 DEKR 359
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +3
Query: 240 TILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIP 419
++ S G + +C+++R + TG+S GY FV + A + N + + IK +Y
Sbjct: 60 SLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSYAR 119
Query: 420 P 422
P
Sbjct: 120 P 120
Score = 34.3 bits (75), Expect = 0.11
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 237 DTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 374
++I + FG + R++ TG SKG FV F A + +T+N
Sbjct: 145 ESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLN 190
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRL 398
FG V+ C V+R T R++G+ F+ F DP+ V + L GK++
Sbjct: 68 FGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKI 115
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRL 398
FG V+ C V+R T R++G+ F+ F DP+ V + L GK++
Sbjct: 68 FGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKI 115
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 37.5 bits (83), Expect = 0.011
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 404
FG + + + TG K +AFVE+ P A + E+MN ++G R +K
Sbjct: 125 FGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLK 174
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/56 (23%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 240 TILQSFGGVSNCRVIRSRRTGRS-KGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 404
++ ++FG + C++ R+ TGR +G+ ++EF++ MN + +G + ++
Sbjct: 225 SVFEAFGEIVKCQLARAP-TGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQYLR 279
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 37.5 bits (83), Expect = 0.011
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 404
FG + + + TG K +AFVE+ P A + E+MN ++G R +K
Sbjct: 125 FGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLK 174
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +3
Query: 240 TILQSFGGVSNCRVIRSRRTGRS-KGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKA--A 410
++ ++FG + C++ R+ TGR +G+ ++EF++ MN + +G + ++
Sbjct: 225 SVFEAFGEIVKCQLARAP-TGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQYLRVGKC 283
Query: 411 YIPPD 425
PPD
Sbjct: 284 VTPPD 288
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 37.5 bits (83), Expect = 0.011
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 404
FG + + + TG K +AFVE+ P A + E+MN ++G R +K
Sbjct: 125 FGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLK 174
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +3
Query: 240 TILQSFGGVSNCRVIRSRRTGRS-KGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKA--A 410
++ ++FG + C++ R+ TGR +G+ ++EF++ MN + +G + ++
Sbjct: 225 SVFEAFGEIVKCQLARAP-TGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQYLRVGKC 283
Query: 411 YIPPD 425
PPD
Sbjct: 284 VTPPD 288
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 37.1 bits (82), Expect = 0.015
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Frame = +3
Query: 162 NKKKETCKRACLF-GTYPTWIL*ASNDTILQS-FGGVSNCRVIRSRRTGRSKGYAFVEF- 332
+KKKE K +F G P I + T + G V R++R + TG+ KG+AFV F
Sbjct: 237 SKKKEFGKDMAIFVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFK 296
Query: 333 HDPAVAQIVAETMNNYLMGKR 395
D +V+ +A +M M KR
Sbjct: 297 QDSSVS--LALSMETIKMEKR 315
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 37.1 bits (82), Expect = 0.015
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPDKRR 434
FG + +C+V G SKGY FV F AQ E +N L+ + + P +R
Sbjct: 168 FGNILSCKVATDDE-GNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQR 226
Score = 35.1 bits (77), Expect = 0.061
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAA 410
SFG +++ +V+ GRSKG+ FV F P A MN+ ++G + + A
Sbjct: 365 SFGTITSAKVMVDEN-GRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVA 416
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 258 GGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 374
G V + RV R + S GYA+V F PA A+ +TMN
Sbjct: 81 GPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMN 119
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 37.1 bits (82), Expect = 0.015
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPDKRR 434
FG + +C+V G SKGY FV F AQ E +N L+ + + P +R
Sbjct: 168 FGNILSCKVATDDE-GNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQR 226
Score = 35.1 bits (77), Expect = 0.061
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAA 410
SFG +++ +V+ GRSKG+ FV F P A MN+ ++G + + A
Sbjct: 365 SFGTITSAKVMVDEN-GRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVA 416
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 258 GGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 374
G V + RV R + S GYA+V F PA A+ +TMN
Sbjct: 81 GPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMN 119
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 36.7 bits (81), Expect = 0.020
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Frame = +3
Query: 129 DPRH--P*STRRENKKKETCKRACLFGTYPTWIL*ASNDTILQSFGGVSNCRVIRSRRTG 302
+PRH P + + E +E +R L + + G V + R+I RTG
Sbjct: 4 NPRHSPPKNAKLELTAEERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTG 63
Query: 303 RSKGYAFVEFHDPAVAQIVAETMNNYLMGKRL 398
RSKG +VEF D + LMG L
Sbjct: 64 RSKGICYVEFWDEESVPLGLALNGQRLMGAPL 95
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 36.7 bits (81), Expect = 0.020
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Frame = +3
Query: 129 DPRH--P*STRRENKKKETCKRACLFGTYPTWIL*ASNDTILQSFGGVSNCRVIRSRRTG 302
+PRH P + + E +E +R L + + G V + R+I RTG
Sbjct: 149 NPRHSPPKNAKLELTAEERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTG 208
Query: 303 RSKGYAFVEFHDPAVAQIVAETMNNYLMGKRL 398
RSKG +VEF D + LMG L
Sbjct: 209 RSKGICYVEFWDEESVPLGLALNGQRLMGAPL 240
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 35.9 bits (79), Expect = 0.035
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +3
Query: 258 GGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 374
G V + RV R T S GYA+V F PA A+ +TMN
Sbjct: 56 GPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMN 94
Score = 35.5 bits (78), Expect = 0.046
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM-GKRLIKAAYIPPDKR 431
FG + +C+V G SKGY FV F AQ + +N L+ GK++ + P +R
Sbjct: 143 FGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQR 201
Score = 33.5 bits (73), Expect = 0.18
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +3
Query: 237 DTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN 377
+ + FG +++C V+ G+SKG+ FV F +P A+ + +++
Sbjct: 230 EKVFAKFGNITSCEVMTVE--GKSKGFGFVAFANPEEAETAVQALHD 274
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM 386
+S+G +++ +V+ GRSKG+ FV F P A MN+ ++
Sbjct: 338 ESYGNITSAKVMTDEN-GRSKGFGFVCFEKPEEATSAVTEMNSKMV 382
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 35.9 bits (79), Expect = 0.035
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +3
Query: 258 GGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 374
G V + RV R T S GYA+V F PA A+ +TMN
Sbjct: 56 GPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMN 94
Score = 33.1 bits (72), Expect = 0.24
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +3
Query: 237 DTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN 377
+ + FG +++C V+ G+SKG+ FV F +P A+ + +++
Sbjct: 170 EKLFAKFGNITSCEVMTVE--GKSKGFGFVAFANPEEAETAVQALHD 214
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM 386
+S+G +++ +V+ GRSKG+ FV F P A MN+ ++
Sbjct: 278 ESYGNITSAKVMTDEN-GRSKGFGFVCFEKPEEATSAVTEMNSKMV 322
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 35.9 bits (79), Expect = 0.035
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +3
Query: 258 GGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 374
G V + RV R T S GYA+V F PA A+ +TMN
Sbjct: 56 GPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMN 94
Score = 35.5 bits (78), Expect = 0.046
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM-GKRLIKAAYIPPDKR 431
FG + +C+V G SKGY FV F AQ + +N L+ GK++ + P +R
Sbjct: 143 FGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQR 201
Score = 33.1 bits (72), Expect = 0.24
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +3
Query: 237 DTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN 377
+ + FG +++C V+ G+SKG+ FV F +P A+ + +++
Sbjct: 230 EKLFAKFGNITSCEVMTVE--GKSKGFGFVAFANPEEAETAVQALHD 274
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM 386
+S+G +++ +V+ GRSKG+ FV F P A MN+ ++
Sbjct: 338 ESYGNITSAKVMTDEN-GRSKGFGFVCFEKPEEATSAVTEMNSKMV 382
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 35.9 bits (79), Expect = 0.035
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRL-IKAAYI 416
+ FG + VI R T +S+GY FV D A A+ + N + G++ + AY+
Sbjct: 56 EQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDPNPIIDGRKANVNLAYL 112
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 35.5 bits (78), Expect = 0.046
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM-GKRLIKAAYIPPDKR 431
FG + +C+V G SKGY FV F AQ + +N L+ GK++ + P +R
Sbjct: 80 FGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQR 138
Score = 33.1 bits (72), Expect = 0.24
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +3
Query: 237 DTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN 377
+ + FG +++C V+ G+SKG+ FV F +P A+ + +++
Sbjct: 167 EKLFAKFGNITSCEVMTVE--GKSKGFGFVAFANPEEAETAVQALHD 211
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM 386
+S+G +++ +V+ GRSKG+ FV F P A MN+ ++
Sbjct: 275 ESYGNITSAKVMTDEN-GRSKGFGFVCFEKPEEATSAVTEMNSKMV 319
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 35.1 bits (77), Expect = 0.061
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +3
Query: 231 SNDTILQS----FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 374
+ND +L+ +G +++ + I + T KGY FV+F P A + +N
Sbjct: 118 TNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLN 169
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 35.1 bits (77), Expect = 0.061
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +3
Query: 231 SNDTILQS----FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 374
+ND +L+ +G +++ + I + T KGY FV+F P A + +N
Sbjct: 92 TNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLN 143
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 35.1 bits (77), Expect = 0.061
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 404
+ + +V+R RT +SKGY FV F D M+ +G R IK
Sbjct: 224 RKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIK 275
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 33.5 bits (73), Expect = 0.18
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 246 LQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM-NNYLMGKRLIKAAYIPP 422
L FG + + + + +G SKG AFV F P A E + + ++ RL+KA P
Sbjct: 283 LSKFGKIDLAIICKYKDSGHSKGTAFVHFSTPIEASNCIEGVEDGVIIDNRLVKANLAIP 342
Query: 423 DK 428
K
Sbjct: 343 RK 344
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN 377
I FG + +C V+R + G+S+G AFV F + + A + + M++
Sbjct: 161 IFAKFGHIEDCSVLRDQ-DGKSRGCAFVTFTNRSCAVVATKEMHH 204
Score = 31.5 bits (68), Expect = 0.75
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFH 335
+ + +G V +C ++R + T SKG FV F+
Sbjct: 74 LFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN 377
I FG + +C V+R + G+S+G AFV F + + A + + M++
Sbjct: 161 IFAKFGHIEDCSVLRDQ-DGKSRGCAFVTFTNRSCAVVATKEMHH 204
Score = 31.5 bits (68), Expect = 0.75
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFH 335
+ + +G V +C ++R + T SKG FV F+
Sbjct: 74 LFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN 377
I FG + +C V+R + G+S+G AFV F + + A + + M++
Sbjct: 161 IFAKFGHIEDCSVLRDQ-DGKSRGCAFVTFTNRSCAVVATKEMHH 204
Score = 31.5 bits (68), Expect = 0.75
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFH 335
+ + +G V +C ++R + T SKG FV F+
Sbjct: 74 LFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN 377
I FG + +C V+R + G+S+G AFV F + + A + + M++
Sbjct: 161 IFAKFGHIEDCSVLRDQ-DGKSRGCAFVTFTNRSCAVVATKEMHH 204
Score = 31.5 bits (68), Expect = 0.75
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFH 335
+ + +G V +C ++R + T SKG FV F+
Sbjct: 74 LFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN 377
I FG + +C V+R + G+S+G AFV F + + A + + M++
Sbjct: 161 IFAKFGHIEDCSVLRDQ-DGKSRGCAFVTFTNRSCAVVATKEMHH 204
Score = 31.5 bits (68), Expect = 0.75
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFH 335
+ + +G V +C ++R + T SKG FV F+
Sbjct: 74 LFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN 377
I FG + +C V+R + G+S+G AFV F + + A + + M++
Sbjct: 161 IFAKFGHIEDCSVLRDQ-DGKSRGCAFVTFTNRSCAVVATKEMHH 204
Score = 31.5 bits (68), Expect = 0.75
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFH 335
+ + +G V +C ++R + T SKG FV F+
Sbjct: 74 LFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.3 bits (70), Expect = 0.43
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 276 RVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 413
+++R +G SKG+AF+ F + E MN + R I +Y
Sbjct: 131 KIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSY 176
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.3 bits (70), Expect = 0.43
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 276 RVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 413
+++R +G SKG+AF+ F + E MN + R I +Y
Sbjct: 141 KIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSY 186
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 31.9 bits (69), Expect = 0.56
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRL-IKAAYIPPDKR 431
+G V+ +V R GRS+G+AFVEF ++ + GK + +K A +K+
Sbjct: 52 YGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPAKSRENKK 111
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 31.9 bits (69), Expect = 0.56
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRL-IKAAYIPPDKR 431
+G V+ +V R GRS+G+AFVEF ++ + GK + +K A +K+
Sbjct: 52 YGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPAKSRENKK 111
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 31.5 bits (68), Expect = 0.75
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFH 335
+ + +G V +C ++R + T SKG FV F+
Sbjct: 74 LFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 300 GRSKGYAFVEFHDPAVAQIVAETMNNYLMG-KRLI 401
G SKGYAF E+ DP + +N +G K+L+
Sbjct: 328 GNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLV 362
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 300 GRSKGYAFVEFHDPAVAQIVAETMNNYLMG-KRLI 401
G SKGYAF E+ DP + +N +G K+L+
Sbjct: 328 GNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLV 362
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 300 GRSKGYAFVEFHDPAVAQIVAETMNNYLMG-KRLI 401
G SKGYAF E+ DP + +N +G K+L+
Sbjct: 303 GNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLV 337
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 300 GRSKGYAFVEFHDPAVAQIVAETMNNYLMG-KRLI 401
G SKGYAF E+ DP + +N +G K+L+
Sbjct: 306 GNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLV 340
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = +3
Query: 156 RENKKKETCKRACLFGTYPTWIL*ASNDTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFH 335
REN + C +Y T + FG ++ C ++ R +G S+G+ F+ F+
Sbjct: 69 RENPQPSKCLGVFNLSSYTTE---KDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFN 125
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVA-QIVAETMNNYLMGKRL 398
+G + N + RRTG KGYA VE+ A + + ++ + L+G+ +
Sbjct: 78 YGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQSNDTDLLGQNV 126
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPDKR 431
FG +++ V+R T RS+G+ FV F + + + GK + +P D +
Sbjct: 46 FGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDK 104
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPDKR 431
FG +++ V+R T RS+G+ FV F + + + GK + +P D +
Sbjct: 8 FGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDK 66
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPDKR 431
FG +++ V+R T RS+G+ FV F + + + GK + +P D +
Sbjct: 8 FGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDK 66
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPDKR 431
FG +++ V+R T RS+G+ FV F + + + GK + +P D +
Sbjct: 46 FGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDK 104
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPDKR 431
FG +++ V+R T RS+G+ FV F + + + GK + +P D +
Sbjct: 46 FGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDK 104
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
K08F8.6 protein.
Length = 2862
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 396 IFSP*DNYSWSQQQFVRQQDHETLQMH 316
+ SP + + QQQ V+QQ + +QMH
Sbjct: 1403 LMSPIHQHQFHQQQMVQQQQQQQMQMH 1429
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 396 IFSP*DNYSWSQQQFVRQQDHETLQMH 316
+ SP + + QQQ V+QQ + +QMH
Sbjct: 1403 LMSPIHQHQFHQQQMVQQQQQQQMQMH 1429
>Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical
protein F15G9.4b protein.
Length = 5198
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +3
Query: 234 NDTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 413
+D + G + + ++R Y V FHDP + +I+ T + Y M R + Y
Sbjct: 49 DDLVQVREGAAKIFKTVMAQREKLIYNYIMVPFHDPYLGEIINTTDSTYFM--RQLSKVY 106
Query: 414 I 416
+
Sbjct: 107 V 107
>Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical
protein F15G9.4a protein.
Length = 5175
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +3
Query: 234 NDTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 413
+D + G + + ++R Y V FHDP + +I+ T + Y M R + Y
Sbjct: 49 DDLVQVREGAAKIFKTVMAQREKLIYNYIMVPFHDPYLGEIINTTDSTYFM--RQLSKVY 106
Query: 414 I 416
+
Sbjct: 107 V 107
>Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical
protein F15G9.4b protein.
Length = 5198
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +3
Query: 234 NDTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 413
+D + G + + ++R Y V FHDP + +I+ T + Y M R + Y
Sbjct: 49 DDLVQVREGAAKIFKTVMAQREKLIYNYIMVPFHDPYLGEIINTTDSTYFM--RQLSKVY 106
Query: 414 I 416
+
Sbjct: 107 V 107
>Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical
protein F15G9.4a protein.
Length = 5175
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +3
Query: 234 NDTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 413
+D + G + + ++R Y V FHDP + +I+ T + Y M R + Y
Sbjct: 49 DDLVQVREGAAKIFKTVMAQREKLIYNYIMVPFHDPYLGEIINTTDSTYFM--RQLSKVY 106
Query: 414 I 416
+
Sbjct: 107 V 107
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM-GKRLIKAAYIPPD 425
+++G + ++ G+ +GYAF+E+ D A + + + GKRL+ D
Sbjct: 125 EAYGKIKKLTMVHDE-AGKPRGYAFIEYSDKAEMHTAYKKADGIKVDGKRLV------VD 177
Query: 426 KRRWAMRYTWNPQ 464
R + TW P+
Sbjct: 178 YERGRTQKTWLPR 190
>AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin
precursor protein.
Length = 5198
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +3
Query: 234 NDTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 413
+D + G + + ++R Y V FHDP + +I+ T + Y M R + Y
Sbjct: 49 DDLVQVREGAAKIFKTVMAQREKLIYNYIMVPFHDPYLGEIINTTDSTYFM--RQLSKVY 106
Query: 414 I 416
+
Sbjct: 107 V 107
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 396 IFSP*DNYSWSQQQFVRQQDHETLQMH 316
+ SP + + QQQ V+QQ + +QMH
Sbjct: 1403 LMSPIHQHQFHQQQMVQQQQQQQMQMH 1429
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 258 GGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRL 398
G VS + R +G KG+A+VEF + Q ++ L G+++
Sbjct: 102 GSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNALAMTDSLLRGRQI 148
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 258 GGVSNCRVIRSRRTGRSKGYAFVEFHD-PAVAQIVAETMNNYLMGKRLIKAAYIPP 422
G V + R + TG KG+AFV F A+ +AE +N+ M ++K + P
Sbjct: 200 GRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAE-LNDIRMYHMVLKVEWTRP 254
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = +3
Query: 201 GTYPTWIL*ASNDTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNY 380
G PT + + + + G + + R++ +G S+GYAFV + + A A+T + +
Sbjct: 205 GHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKTYDGH 264
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -2
Query: 425 IRWYVSSFYQSFPHEIIIHGLSNNLCDSR 339
+RW+ +S+ S+ E+ + L NLC+ +
Sbjct: 90 LRWWAASYRNSYGEEMPVEQLVQNLCNEK 118
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,141,957
Number of Sequences: 27780
Number of extensions: 255323
Number of successful extensions: 643
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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