Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021235
(816 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 61 7e-10
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 50 2e-06
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 49 4e-06
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 48 6e-06
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 48 6e-06
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 48 6e-06
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 47 2e-05
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 47 2e-05
At5g51300.2 68418.m06360 splicing factor-related contains simila... 45 5e-05
At5g51300.1 68418.m06359 splicing factor-related contains simila... 45 5e-05
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 44 9e-05
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 44 1e-04
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 42 5e-04
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 42 5e-04
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 42 6e-04
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 42 6e-04
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 42 6e-04
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 41 9e-04
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 41 9e-04
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 41 9e-04
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 41 9e-04
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 41 9e-04
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 41 9e-04
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 41 0.001
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 40 0.001
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 40 0.001
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 40 0.001
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 40 0.001
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 40 0.001
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 40 0.002
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 40 0.002
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 40 0.002
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 40 0.002
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 40 0.003
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 40 0.003
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 40 0.003
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 40 0.003
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 39 0.003
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 39 0.003
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 39 0.003
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 39 0.003
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 39 0.003
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 39 0.005
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 39 0.005
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 39 0.005
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 39 0.005
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 39 0.005
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 39 0.005
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 38 0.006
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 38 0.006
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 38 0.006
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 38 0.008
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 38 0.008
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 38 0.011
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 37 0.014
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 37 0.014
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 37 0.014
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 37 0.014
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 37 0.014
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 37 0.018
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 37 0.018
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 37 0.018
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 36 0.024
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 36 0.024
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 36 0.024
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 36 0.024
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 36 0.024
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 36 0.024
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 36 0.024
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 36 0.024
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 36 0.024
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 36 0.024
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 36 0.032
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 36 0.032
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 36 0.042
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 36 0.042
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 36 0.042
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 36 0.042
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 36 0.042
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 35 0.056
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 35 0.056
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 35 0.056
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 34 0.098
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 34 0.098
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 34 0.098
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 34 0.098
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 34 0.098
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 34 0.13
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 34 0.13
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 34 0.13
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 33 0.17
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 33 0.17
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 33 0.17
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 33 0.17
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 33 0.23
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 33 0.23
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 33 0.23
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 33 0.23
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 33 0.30
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 33 0.30
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 32 0.40
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 32 0.40
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 32 0.40
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 32 0.40
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 32 0.40
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 32 0.52
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 32 0.52
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 32 0.52
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 32 0.52
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 32 0.52
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 31 0.69
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 31 0.69
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 31 0.69
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 31 0.91
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 31 0.91
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 31 1.2
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 31 1.2
At5g25780.1 68418.m03060 eukaryotic translation initiation facto... 31 1.2
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 31 1.2
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 31 1.2
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 30 1.6
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 30 1.6
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 30 1.6
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 30 1.6
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 30 2.1
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 29 2.8
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 29 2.8
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 29 2.8
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 29 2.8
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 29 2.8
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 29 2.8
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 29 2.8
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 3.7
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 29 3.7
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 29 3.7
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 29 3.7
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 29 4.9
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 29 4.9
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 29 4.9
At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein... 28 6.4
At5g18700.1 68418.m02219 protein kinase-related contains protein... 28 8.5
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 28 8.5
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 28 8.5
At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger) fa... 28 8.5
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 28 8.5
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 28 8.5
At1g11000.1 68414.m01263 seven transmembrane MLO family protein ... 28 8.5
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 61.3 bits (142), Expect = 7e-10
Identities = 25/63 (39%), Positives = 40/63 (63%)
Frame = +3
Query: 237 DTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYI 416
+ FG V RV R+++TG+SK + F++F DP VA+I A MN+YL+ + ++K I
Sbjct: 77 EAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAMNDYLLMEHMLKVHVI 136
Query: 417 PPD 425
P+
Sbjct: 137 EPE 139
Score = 33.1 bits (72), Expect = 0.23
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +1
Query: 190 LVYLGHIPHGFYEHQMTQYFS 252
++Y+G IPHGFYE ++ +FS
Sbjct: 61 VLYIGRIPHGFYETEIEAFFS 81
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 49.6 bits (113), Expect = 2e-06
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 401
+L+SFG + +++ R TG SKGYAF + DP+V I +N MG + +
Sbjct: 394 LLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTL 446
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 48.8 bits (111), Expect = 4e-06
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Frame = +3
Query: 216 WIL*ASNDTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM-GK 392
W A +++L +G V + R +G+SKGY VEF+D A A E MN ++ GK
Sbjct: 212 WTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGMNGFIFNGK 271
Query: 393 RLIKAAYIPPDKRRWAMRYTW-NPQNNPVLN 482
+ A P ++ +T N N + N
Sbjct: 272 ACVVAFASPETLKQMGANFTGRNQGQNQIQN 302
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 48.4 bits (110), Expect = 6e-06
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 401
+L+SFGG+ +++ R TG SKGYAF + D +V I +N MG + +
Sbjct: 378 LLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTL 430
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 48.4 bits (110), Expect = 6e-06
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 401
+L+SFGG+ +++ R TG SKGYAF + D +V I +N MG + +
Sbjct: 378 LLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTL 430
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 48.4 bits (110), Expect = 6e-06
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 401
+L+SFGG+ +++ R TG SKGYAF + D +V I +N MG + +
Sbjct: 378 LLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTL 430
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKA-AYIPPDK 428
SFG V +++ R TGR++G+ FV F DPAVA+IV +N + RL++A +P D
Sbjct: 28 SFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEKHN--IDGRLVEAKKAVPRDD 85
Query: 429 RRWAMR 446
+ R
Sbjct: 86 QNMVNR 91
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKA-AYIPPDK 428
SFG V +++ R TGR++G+ FV F DPAVA+IV +N + RL++A +P D
Sbjct: 28 SFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEKHN--IDGRLVEAKKAVPRDD 85
Query: 429 RRWAMR 446
+ R
Sbjct: 86 QNMVNR 91
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 45.2 bits (102), Expect = 5e-05
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Frame = +3
Query: 111 NASEGSDPRHP*--STRRENKKKETCKRACLFGTYPTWIL*ASNDTILQSFGGVSNCRVI 284
NA G+ HP ST + KE + G P + + SFG + +VI
Sbjct: 454 NAGNGASA-HPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVI 512
Query: 285 RSRRTGRSKGYAFVEFHDPAVAQIVAETMNNY 380
+ R TG SKGY FV++ D +A + MN Y
Sbjct: 513 KDRVTGLSKGYGFVKYADVQMANTAVQAMNGY 544
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 45.2 bits (102), Expect = 5e-05
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Frame = +3
Query: 111 NASEGSDPRHP*--STRRENKKKETCKRACLFGTYPTWIL*ASNDTILQSFGGVSNCRVI 284
NA G+ HP ST + KE + G P + + SFG + +VI
Sbjct: 454 NAGNGASA-HPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVI 512
Query: 285 RSRRTGRSKGYAFVEFHDPAVAQIVAETMNNY 380
+ R TG SKGY FV++ D +A + MN Y
Sbjct: 513 KDRVTGLSKGYGFVKYADVQMANTAVQAMNGY 544
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 44.4 bits (100), Expect = 9e-05
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +3
Query: 189 ACLF-GTYPTWIL*ASNDTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 365
A LF G W A + L +G V + + +G+SKGY VEF+DP A +
Sbjct: 234 AFLFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKD 293
Query: 366 TMNNYLMGKRLIKAAYIPP 422
+N Y R Y P
Sbjct: 294 ALNGYPFNGRPCVVEYASP 312
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +3
Query: 234 NDTILQS----FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 401
ND +L F + +VIR +RTG++KGY FV F +PA + MN +G R I
Sbjct: 149 NDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEMNGKYVGNRPI 208
Query: 402 K 404
K
Sbjct: 209 K 209
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 41.9 bits (94), Expect = 5e-04
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKR 395
+ FG + VI + TGRSKGY FV F + A + MN + G+R
Sbjct: 43 EQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMNPVIDGRR 91
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 41.9 bits (94), Expect = 5e-04
Identities = 26/80 (32%), Positives = 37/80 (46%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPDKR 431
SFG + +C+V TGRSKGY FV+F AQ + +N LM + + + +
Sbjct: 158 SFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQE 216
Query: 432 RWAMRYTWNPQNNPVLNTNL 491
R T P+ V NL
Sbjct: 217 RARDENTPTPRFTNVYVKNL 236
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPDKR 431
+FG ++ ++I+ RSKGYAF++F A + ETM+ + R+I P KR
Sbjct: 62 AFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDIAKPGKR 121
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 41.5 bits (93), Expect = 6e-04
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 9/114 (7%)
Frame = +3
Query: 84 LQKNYKEEKNASEGSDPRHP*STRRENKKKETCKRACL--------FGTYPTWIL*ASND 239
+++ +EE E + +T E +KK + L G PT
Sbjct: 50 IEEEIEEEVEVEEEEEEEDAVATEEEEEKKRHVELLALPPHGSEVYLGGIPTDATEGDLK 109
Query: 240 TILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNY-LMGKRL 398
S G V+ R++R + +G KGYAFV F +A +T+NN GKR+
Sbjct: 110 GFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRI 163
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +3
Query: 300 GRSKGYAFVEFHDPAVAQIVAETMNN 377
GR++G+AF+E+++ A A+ + M+N
Sbjct: 212 GRNRGFAFIEYYNHACAEYSKQKMSN 237
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 41.5 bits (93), Expect = 6e-04
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = +3
Query: 240 TILQSFGGVSNC---RVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 404
T+ QSF S+C RV+ ++TGRS+G+ FV F + AQ MN + R I+
Sbjct: 159 TLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIR 216
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 41.1 bits (92), Expect = 9e-04
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPP 422
+ FG V+N ++I + RT +S GY +V F+ AQ E MN R I + P
Sbjct: 96 VFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKFFDGRFILVKFGQP 155
Query: 423 DKRR 434
R
Sbjct: 156 GLSR 159
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 41.1 bits (92), Expect = 9e-04
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +3
Query: 228 ASNDTILQ----SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKR 395
A+ND LQ FG V + ++I R +GRS+G+ FV F D + E MN + R
Sbjct: 16 ATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGR 75
Query: 396 LI 401
+I
Sbjct: 76 VI 77
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 41.1 bits (92), Expect = 9e-04
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +3
Query: 228 ASNDTILQ----SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKR 395
A+ND LQ FG V + ++I R +GRS+G+ FV F D + E MN + R
Sbjct: 16 ATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGR 75
Query: 396 LI 401
+I
Sbjct: 76 VI 77
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 41.1 bits (92), Expect = 9e-04
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +3
Query: 228 ASNDTILQ----SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKR 395
A+ND LQ FG V + ++I R +GRS+G+ FV F D + E MN + R
Sbjct: 16 ATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGR 75
Query: 396 LI 401
+I
Sbjct: 76 VI 77
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 41.1 bits (92), Expect = 9e-04
Identities = 17/40 (42%), Positives = 28/40 (70%)
Frame = +3
Query: 258 GGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN 377
G + + +VIR+++TG+ +GY F+EF A A+ V +T NN
Sbjct: 86 GEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNN 125
Score = 36.3 bits (80), Expect = 0.024
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +3
Query: 237 DTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN 377
+T S+ V +V+ R TGR+KGY FV F D + QI A T N
Sbjct: 173 ETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES-EQIRAMTEMN 218
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 41.1 bits (92), Expect = 9e-04
Identities = 17/40 (42%), Positives = 28/40 (70%)
Frame = +3
Query: 258 GGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN 377
G + + +VIR+++TG+ +GY F+EF A A+ V +T NN
Sbjct: 86 GEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNN 125
Score = 36.3 bits (80), Expect = 0.024
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +3
Query: 237 DTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN 377
+T S+ V +V+ R TGR+KGY FV F D + QI A T N
Sbjct: 173 ETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES-EQIRAMTEMN 218
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/45 (37%), Positives = 30/45 (66%)
Frame = +3
Query: 240 TILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 374
++ G ++ +VIR++ TG+S+GY F+EF +VA+ V +T N
Sbjct: 78 SVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTYN 122
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = +3
Query: 234 NDTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHD 338
+DT +G V +V+ R TGRSKGY FV F D
Sbjct: 171 SDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFAD 205
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/67 (29%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKA-AYIPPDK 428
++G V ++R R TGR++G+ F+ F DP V++ V M+ +++ R ++A +P D
Sbjct: 28 NYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV--IMDKHIIDGRTVEAKKAVPRDD 85
Query: 429 RRWAMRY 449
++ R+
Sbjct: 86 QQVLKRH 92
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/67 (29%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKA-AYIPPDK 428
++G V ++R R TGR++G+ F+ F DP V++ V M+ +++ R ++A +P D
Sbjct: 28 NYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV--IMDKHIIDGRTVEAKKAVPRDD 85
Query: 429 RRWAMRY 449
++ R+
Sbjct: 86 QQVLKRH 92
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/67 (29%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKA-AYIPPDK 428
++G V ++R R TGR++G+ F+ F DP V++ V M+ +++ R ++A +P D
Sbjct: 28 NYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV--IMDKHIIDGRTVEAKKAVPRDD 85
Query: 429 RRWAMRY 449
++ R+
Sbjct: 86 QQVLKRH 92
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/66 (30%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKA-AYIPPDKR 431
+G + ++R R TGR++G+ F+ F DP+VA+ V M+ +++ R ++A +P D +
Sbjct: 38 YGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV--IMDKHIIDGRTVEAKKAVPRDDQ 95
Query: 432 RWAMRY 449
+ R+
Sbjct: 96 QVLKRH 101
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/84 (29%), Positives = 39/84 (46%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPDKR 431
+FG V V+R + TGR +G+ FV F DPAV V + ++ +K A ++
Sbjct: 28 NFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDKHHIDNRDVDVKRAMSREEQS 87
Query: 432 RWAMRYTWNPQNNPVLNTNLKLKK 503
T+N N N++ KK
Sbjct: 88 PAGRSGTFNASRNFDSGANVRTKK 111
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPD 425
+++G VS+ ++ + T R +G+ FV F +V + L GK++ +P D
Sbjct: 131 ETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRALPKD 189
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/58 (36%), Positives = 33/58 (56%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPD 425
SFG V +++ R TGR++G+ FV F DP VA+ V + + + GK + +P D
Sbjct: 28 SFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV-LLKHIIDGKIVEAKKAVPRD 84
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/58 (36%), Positives = 33/58 (56%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPD 425
SFG V +++ R TGR++G+ FV F DP VA+ V + + + GK + +P D
Sbjct: 28 SFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV-LLKHIIDGKIVEAKKAVPRD 84
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +3
Query: 237 DTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 401
+T +G V + ++I R TGRS+G+ FV F D + E MN + R I
Sbjct: 25 ETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSI 79
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +3
Query: 237 DTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 401
+T +G V + ++I R TGRS+G+ FV F D + E MN + R I
Sbjct: 25 ETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSI 79
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +3
Query: 228 ASNDTILQ----SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 374
A+ND LQ FG V + ++I R +GRS+G+ FV F D + E MN
Sbjct: 16 ATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 404
FG V + +VI R TGRS+G+ FV F+D A M+ + R I+
Sbjct: 58 FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIR 107
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 404
FG V + +VI R TGRS+G+ FV F+D A M+ + R I+
Sbjct: 58 FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIR 107
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKR 395
+ +G + VI + TGRSKGY FV F DP A+ + G+R
Sbjct: 45 EQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRR 93
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNY-LMGKRLIKAAYIP 419
+ +S G V VI + TGRS+G+ FV A + A+ N Y G+ L A P
Sbjct: 118 LFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPP 177
Query: 420 PDKR 431
P KR
Sbjct: 178 PPKR 181
Score = 31.5 bits (68), Expect = 0.69
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +3
Query: 237 DTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAA 410
+ + G V RVI R +GRSKG+ FV Q ++N + R I+ +
Sbjct: 266 ENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVS 323
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNY-LMGKRLIKAAYIP 419
+ +S G V VI + TGRS+G+ FV A + A+ N Y G+ L A P
Sbjct: 118 LFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPP 177
Query: 420 PDKR 431
P KR
Sbjct: 178 PPKR 181
Score = 31.5 bits (68), Expect = 0.69
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +3
Query: 237 DTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAA 410
+ + G V RVI R +GRSKG+ FV Q ++N + R I+ +
Sbjct: 274 ENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVS 331
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNY-LMGKRLIKAAYIP 419
+ +S G V VI + TGRS+G+ FV + + A+ N Y L G+ L A P
Sbjct: 110 LFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPP 169
Query: 420 PDKR 431
P KR
Sbjct: 170 PPKR 173
Score = 32.3 bits (70), Expect = 0.40
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +3
Query: 237 DTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNY-LMGKRL-IKAA 410
+++ G V RVI R +GRSKG+ FV + Q ++++ L G+++ + A
Sbjct: 221 ESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280
Query: 411 YIPPDKRRW 437
P +R++
Sbjct: 281 EARPPRRQY 289
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +3
Query: 183 KRACLF-GTYPTWIL*ASNDTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIV 359
+R C+F G P I G V + R++ R TG+ KGY F E+ D A
Sbjct: 7 QRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSA 66
Query: 360 AETMNNYLMGKRLIKAAYIPPDK 428
+ +Y + R ++ + DK
Sbjct: 67 RRNLQSYEINGRQLRVDFAENDK 89
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 404
+F S+ RV+ ++TGRS+G+ FV F + AQ MN + R I+
Sbjct: 170 AFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIR 220
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 38.7 bits (86), Expect = 0.005
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 404
+ +G + + +IR + TG+SKG+AF+ + D + + +N L+ R IK
Sbjct: 55 VFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIK 108
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +3
Query: 231 SNDTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKA 407
S + FG V + ++I R TGRSKG+ FV F D + + MN + R I A
Sbjct: 59 SIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELDGRNITA 117
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 401
SFG + +C+V GRSKGY FV+F AQ + +N L+ + +
Sbjct: 154 SFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQV 202
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQ 353
+ FG + VI + +GRSKGY FV F DP AQ
Sbjct: 28 EQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQ 353
+ FG + VI + +GRSKGY FV F DP AQ
Sbjct: 28 EQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKR 395
+G + VI + TGRSKGY FV F DP A+ + G+R
Sbjct: 47 YGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPTPIIDGRR 93
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 374
SF GV+ RV+ ++ TGRS+GY FV F A MN
Sbjct: 53 SFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMN 93
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 374
+ FG V+N ++I + RT +S GY +V F+ AQ E MN
Sbjct: 77 VFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 120
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 38.3 bits (85), Expect = 0.006
Identities = 22/67 (32%), Positives = 32/67 (47%)
Frame = +3
Query: 240 TILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIP 419
TI FG V + VIR +TG S YAF+EF + + M+N L+ R I +
Sbjct: 261 TIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKMDNALIDDRRIHVDFSQ 320
Query: 420 PDKRRWA 440
+ W+
Sbjct: 321 SVSKLWS 327
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 37.9 bits (84), Expect = 0.008
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 413
+G V + RVI R TGRS+G+ FV F A + ++ + R++K Y
Sbjct: 63 YGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNY 115
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 37.9 bits (84), Expect = 0.008
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +3
Query: 258 GGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM 386
G VS+ +VIR++ T +S+GY FVEF A A+ V + + +M
Sbjct: 132 GEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGSVM 174
Score = 36.3 bits (80), Expect = 0.024
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = +3
Query: 234 NDTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 413
++T + V + +V+ TGRSKGY FV F D MN R ++
Sbjct: 219 HETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGI 278
Query: 414 IPPDK 428
P +
Sbjct: 279 ATPKR 283
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 309 KGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPDKRRW 437
KG FV+F D A+ E++N ++GK ++ ++ ++W
Sbjct: 356 KGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSPNKQW 398
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 37.5 bits (83), Expect = 0.011
Identities = 20/47 (42%), Positives = 25/47 (53%)
Frame = +3
Query: 237 DTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN 377
+T + V +V+ R TGRSKGY FV F D + QI A T N
Sbjct: 191 ETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADES-EQIRAMTEMN 236
Score = 34.3 bits (75), Expect = 0.098
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 258 GGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 374
G + +VIR+++ G S+GY F+EF + A A+ +T N
Sbjct: 104 GEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYN 142
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPP 422
FG + +C+++ R TGRS+G+ F+ F D M+ G R+I P
Sbjct: 30 FGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEP 85
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 37.1 bits (82), Expect = 0.014
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM-GKRLIKAAYIPPDKR 431
FG + +C+V+ G+SKG+ FV+F A ++ ++ GK+L A +I D+R
Sbjct: 135 FGSILSCKVVEEN--GQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDER 192
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPDK 428
+ FG V + + R TG +G+ F++F DPA A M+ YL+ R + + ++
Sbjct: 58 EQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENR 117
Query: 429 RR 434
++
Sbjct: 118 KK 119
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 37.1 bits (82), Expect = 0.014
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 240 TILQSFGGVSNCRVIRSRRTGRSKGYAFVEF 332
T +S+G + C V+ + TGR KGY FV F
Sbjct: 426 TAFESYGEIEECSVVMDKDTGRGKGYGFVMF 456
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 37.1 bits (82), Expect = 0.014
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPDK 428
+ FG V + + R TG +G+ FV+F DPA A M+ YL+ R + + ++
Sbjct: 57 EQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENR 116
Query: 429 RR 434
++
Sbjct: 117 KK 118
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 36.7 bits (81), Expect = 0.018
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIP 419
+G +++ ++R R TG+ +G+ F+ F DP+V V E + + GK++ IP
Sbjct: 42 YGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED-THVINGKQVEIKRTIP 95
Score = 32.3 bits (70), Expect = 0.40
Identities = 21/89 (23%), Positives = 33/89 (37%)
Frame = +3
Query: 162 NKKKETCKRACLFGTYPTWIL*ASNDTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDP 341
N+ K+ + G P+ + +G V +VIR T RS+G+ FV F
Sbjct: 101 NQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSE 160
Query: 342 AVAQIVAETMNNYLMGKRLIKAAYIPPDK 428
V + N M ++ P K
Sbjct: 161 EVVDELLSKGNMIDMADTQVEIKKAEPKK 189
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 36.7 bits (81), Expect = 0.018
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIP 419
+G +++ ++R R TG+ +G+ F+ F DP+V V E + + GK++ IP
Sbjct: 42 YGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED-THVINGKQVEIKRTIP 95
Score = 31.5 bits (68), Expect = 0.69
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = +3
Query: 162 NKKKETCKRACLFGTYPTWIL*ASNDTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDP 341
N+ K+ + G P+ + +G V +VIR T RS+G+ FV F
Sbjct: 101 NQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSE 160
Query: 342 AV 347
V
Sbjct: 161 EV 162
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 36.7 bits (81), Expect = 0.018
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +3
Query: 231 SNDTILQSFGG----VSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRL 398
S+ +L++F G V +V+ TGRSKGY FV F D MN R
Sbjct: 225 SDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQ 284
Query: 399 IKAAYIPPDK 428
++ P +
Sbjct: 285 MRVGIATPKR 294
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = +3
Query: 264 VSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM 386
VS+ +VIR+++T +S+GY FVEF + A+ ++ + M
Sbjct: 145 VSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSFSGVTM 185
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 36.3 bits (80), Expect = 0.024
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +3
Query: 246 LQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPP 422
+ FG + +C V++ R TGRS+G+ +V F A+ + + +G R+++ P
Sbjct: 23 MSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK--GEHFLGNRILEVKVATP 79
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 36.3 bits (80), Expect = 0.024
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 365
++G VS V+R + TGR +G+ FV F DP+V V +
Sbjct: 28 NYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQ 65
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAETMNNYLMGKRLIKAAYIPPD 425
+G V++ ++ + T R +G+ FV F + AV ++ +T ++ L GK++ +P D
Sbjct: 133 YGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHD-LSGKQVEVKRALPKD 189
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 36.3 bits (80), Expect = 0.024
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 261 GVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 404
GV +VI R TGRS+G+ F+ F Q TMN + R ++
Sbjct: 244 GVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALR 291
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 36.3 bits (80), Expect = 0.024
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 401
+ + FG + +C+V + G+S+GY FV+F A +T+N+ ++ + I
Sbjct: 131 MFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEI 182
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 309 KGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 401
+GYAFV F +P A+ AET+N G + +
Sbjct: 241 RGYAFVNFDNPEDARRAAETVNGTKFGSKCL 271
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 36.3 bits (80), Expect = 0.024
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = +3
Query: 237 DTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYI 416
++ +G ++ C+++ R TGR +G+ F+ F D A + M+ +G ++I
Sbjct: 29 ESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKA 88
Query: 417 PP 422
P
Sbjct: 89 EP 90
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 36.3 bits (80), Expect = 0.024
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = +3
Query: 237 DTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYI 416
++ +G ++ C+++ R TGR +G+ F+ F D A + M+ +G ++I
Sbjct: 29 ESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKA 88
Query: 417 PP 422
P
Sbjct: 89 EP 90
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 36.3 bits (80), Expect = 0.024
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = +3
Query: 234 NDTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 413
++T + + V +V+ TGRSKGY FV F D MN R ++
Sbjct: 216 HETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGP 275
Query: 414 IPPDK 428
P K
Sbjct: 276 ATPRK 280
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 264 VSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 374
+ + +VIR++ G S+GY FVEF VA V + N
Sbjct: 131 IVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFN 167
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 36.3 bits (80), Expect = 0.024
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = +3
Query: 234 NDTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 413
++T + + V +V+ TGRSKGY FV F D MN R ++
Sbjct: 214 HETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGP 273
Query: 414 IPPDK 428
P K
Sbjct: 274 ATPRK 278
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 264 VSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM 386
+ + +VIR++ G S+GY FVEF VA V N M
Sbjct: 129 IVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTM 169
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 36.3 bits (80), Expect = 0.024
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = +3
Query: 234 NDTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 413
++T + + V +V+ TGRSKGY FV F D MN R ++
Sbjct: 214 HETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGP 273
Query: 414 IPPDK 428
P K
Sbjct: 274 ATPRK 278
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 264 VSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM 386
+ + +VIR++ G S+GY FVEF VA V N M
Sbjct: 129 IVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTM 169
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 36.3 bits (80), Expect = 0.024
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +3
Query: 267 SNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 404
S+ RV+ ++TGRS+G+ FV F + AQ + + +G R I+
Sbjct: 166 SDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIR 211
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 35.9 bits (79), Expect = 0.032
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPP 422
+ + FG V+ C V ++T S+G+ FV F AQ +N Y +++ + P
Sbjct: 193 LFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNGYGYDNLILRVEWSTP 252
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 35.9 bits (79), Expect = 0.032
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN-NYLMGKRLIKAAYIPPDK 428
SFG + + RVI R +GRSKG+ FV + A+ MN +L G + P +
Sbjct: 56 SFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREP 115
Query: 429 RRWAMRYTWNPQNNPVLNTN 488
RR + P + TN
Sbjct: 116 RRPLQQEPLRPSSESGFTTN 135
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 35.5 bits (78), Expect = 0.042
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +3
Query: 237 DTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYI 416
+T + V +V+ TGRSKGY FV+F + + MN R ++ +
Sbjct: 134 ETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAA 193
Query: 417 PPDK 428
P K
Sbjct: 194 TPKK 197
Score = 35.1 bits (77), Expect = 0.056
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +3
Query: 258 GGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM 386
G + + +VIR++ TG+ +GY F+EF A A+ +T N M
Sbjct: 48 GELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQM 90
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 35.5 bits (78), Expect = 0.042
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFH-DPAVAQIVAETMNNYLMGKRL 398
SFG V+ VI R TGRS+G+ FV F + + + E L G+++
Sbjct: 57 SFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQI 106
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 35.5 bits (78), Expect = 0.042
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFH-DPAVAQIVAETMNNYLMGKRL 398
SFG V+ VI R TGRS+G+ FV F + + + E L G+++
Sbjct: 57 SFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQI 106
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 35.5 bits (78), Expect = 0.042
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = +3
Query: 231 SNDTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAA 410
SND +LQ FG R I R T + + F+E++D A+ + +N +G + IK
Sbjct: 282 SNDELLQLFGAYGEIREI--RETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLE 339
Query: 411 YIPPDKRR 434
P R
Sbjct: 340 LSRPGGAR 347
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 35.5 bits (78), Expect = 0.042
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = +3
Query: 231 SNDTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAA 410
SND +LQ FG R I R T + + F+E++D A+ + +N +G + IK
Sbjct: 295 SNDELLQLFGAYGEIREI--RETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLE 352
Query: 411 YIPPDKRR 434
P R
Sbjct: 353 LSRPGGAR 360
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 35.1 bits (77), Expect = 0.056
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN 377
+ + G + R+++ R +G SKGYAFV F VAQ E +++
Sbjct: 135 LCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHS 179
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 35.1 bits (77), Expect = 0.056
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRL 398
+G V + ++I R TGRS+G+AFV F A + L G+R+
Sbjct: 57 YGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRI 104
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 35.1 bits (77), Expect = 0.056
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 270 NCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 404
+ RV+ ++TGRS+G+ FV F + AQ MN + R I+
Sbjct: 180 DARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIR 224
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 34.3 bits (75), Expect = 0.098
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +3
Query: 237 DTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYI 416
+ + G V + RV+ R TGRS+G+ FV+ + + ++ + R IK
Sbjct: 224 ERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283
Query: 417 PPDKRR 434
RR
Sbjct: 284 EERTRR 289
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 34.3 bits (75), Expect = 0.098
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFH-DPAVAQIVAETMNNYLMGKRLI 401
++ +G + N R++R TG S+GY FVE+ + + + + ++ + G+ +I
Sbjct: 83 VMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSLIDGREII 136
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 34.3 bits (75), Expect = 0.098
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKR 395
+ FG + VI + +GRSKGY FV F + A+ + G+R
Sbjct: 34 EQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 34.3 bits (75), Expect = 0.098
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKR 395
+ FG + VI + +GRSKGY FV F + A+ + G+R
Sbjct: 34 EQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 34.3 bits (75), Expect = 0.098
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKR 395
+ FG + VI + +GRSKGY FV F + A+ + G+R
Sbjct: 34 EQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNY-LMGKRL 398
SFG V+ R+ + +GRS+G+ FV+F + A + M+ L+G+ L
Sbjct: 63 SFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPL 112
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 33.9 bits (74), Expect = 0.13
Identities = 23/83 (27%), Positives = 40/83 (48%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPDKR 431
+FG + +C+V +G+SKGY FV++ AQ + +N L+ K Y+ P
Sbjct: 155 AFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLND---KQVYVGP--- 207
Query: 432 RWAMRYTWNPQNNPVLNTNLKLK 500
+ + +P V TN+ +K
Sbjct: 208 -FVHKLQRDPSGEKVKFTNVYVK 229
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 374
+ FG ++C ++R G+SKG+ FV F + A + +N
Sbjct: 243 VFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDALN 285
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKR 395
FG + +I + TG+SKGY FV F D A N + G++
Sbjct: 40 FGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGRK 86
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKR 395
+G + +I + T RSKGY FV F D A E + G+R
Sbjct: 40 YGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRR 86
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 401
+ FG + R+IR T R KG+ F+ F A+ ++++ ++ RLI
Sbjct: 26 LFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLI 78
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKR 395
+ FG + +I + TG+SKGY FV F + A N + G++
Sbjct: 38 EQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRK 86
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKR 395
+ FG + +I + TG+SKGY FV F + A N + G++
Sbjct: 38 EQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRK 86
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 33.1 bits (72), Expect = 0.23
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 258 GGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 404
G V RV+ TGRS+GY FV + A + E+++ + + R I+
Sbjct: 201 GDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIR 249
Score = 32.7 bits (71), Expect = 0.30
Identities = 20/77 (25%), Positives = 35/77 (45%)
Frame = +3
Query: 198 FGTYPTWIL*ASNDTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN 377
FG P + A+ I+Q F V+ +R TG+S+G+AFV + I+ + ++
Sbjct: 89 FGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDG 148
Query: 378 YLMGKRLIKAAYIPPDK 428
R +K + K
Sbjct: 149 TEYLGRALKVNFADKPK 165
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 33.1 bits (72), Expect = 0.23
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 374
FG + N + RR+G KGYA +E+ AQ MN
Sbjct: 118 FGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMN 157
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 33.1 bits (72), Expect = 0.23
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 401
SFG + + V+ R +G S+G+ FV + VA + M N + R+I
Sbjct: 58 SFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRII 107
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 33.1 bits (72), Expect = 0.23
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 365
FG V + ++ R TG +G+ FV F D AVA+ V E
Sbjct: 89 FGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE 125
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 32.7 bits (71), Expect = 0.30
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEF 332
IL +G + + RVIR + +G S+G+AF++F
Sbjct: 317 ILAEWGPLHHVRVIREQNSGISRGFAFIDF 346
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +3
Query: 264 VSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGK--RLIKAAY 413
+ + R++R + T S+G+AFV F+ A E N + + ++++ AY
Sbjct: 484 IKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTALERNGKILRVAY 535
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 32.7 bits (71), Expect = 0.30
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPP 422
+ FG V+ V ++TG S+G+ FV F AQ +N Y +++ + P
Sbjct: 232 LFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATP 291
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 32.3 bits (70), Expect = 0.40
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 401
+ + G V VI +R T +S+G+ FV A+ E N Y + RL+
Sbjct: 169 LFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLL 221
Score = 31.5 bits (68), Expect = 0.69
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 237 DTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHD 338
+ + G V RV+ R TGRS+G+ FV D
Sbjct: 261 EQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSD 294
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 32.3 bits (70), Expect = 0.40
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 401
+ FG + ++I + + RSKGYAF+E+ A + MN ++ +I
Sbjct: 303 EGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMI 353
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 32.3 bits (70), Expect = 0.40
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHD 338
+ FG V + V+ GRSKGY F+ F D
Sbjct: 33 EQFGQVVDANVVSETYPGRSKGYGFITFRD 62
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 32.3 bits (70), Expect = 0.40
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEF 332
+ + +G + C V+ + TG++KG+ FV F
Sbjct: 123 VFEGYGEIEECTVVIDKATGKAKGFGFVMF 152
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 32.3 bits (70), Expect = 0.40
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEF 332
+ + +G + C V+ + TG++KG+ FV F
Sbjct: 123 VFEGYGEIEECTVVIDKATGKAKGFGFVMF 152
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 31.9 bits (69), Expect = 0.52
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 276 RVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 401
R+I+ ++T R KG+ F+ F AQ + +N ++ RLI
Sbjct: 96 RLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLI 137
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 31.9 bits (69), Expect = 0.52
Identities = 21/77 (27%), Positives = 36/77 (46%)
Frame = +3
Query: 240 TILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIP 419
T FG V++ +V+ R +G SKG+ FV + + M+ + +I A Y
Sbjct: 74 TAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYAR 133
Query: 420 PDKRRWAMRYTWNPQNN 470
P ++ ++ PQNN
Sbjct: 134 PREQ----SQSYQPQNN 146
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 31.9 bits (69), Expect = 0.52
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 240 TILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN-NYLMGKRL 398
T+ +FG V+ V++ R T +S+G AFV + A A +M+ L G++L
Sbjct: 75 TLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSMDAKILNGRKL 128
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 31.9 bits (69), Expect = 0.52
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEF 332
+G ++ C V+ + TGR+KG+ FV F
Sbjct: 186 YGEITECSVVMDKDTGRAKGFGFVLF 211
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 31.9 bits (69), Expect = 0.52
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 237 DTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 401
+ + FG +++C+V+ G SKG FVEF A MN ++G + I
Sbjct: 240 EELFSEFGTITSCKVM-VHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPI 293
Score = 31.5 bits (68), Expect = 0.69
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFH 335
+ +FG V +C+V R +G SKGY FV+F+
Sbjct: 50 MFSAFGKVLSCKVARDA-SGVSKGYGFVQFY 79
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 31.5 bits (68), Expect = 0.69
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 240 TILQSFGGVSNCRVIRSRRTGRSKGYAFVEF 332
++ S+G + VI + TG+SKGY FV F
Sbjct: 93 SLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 31.5 bits (68), Expect = 0.69
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 240 TILQSFGGVSNCRVIRSRRTGRSKGYAFVEF 332
++ S+G + VI + TG+SKGY FV F
Sbjct: 93 SLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 31.5 bits (68), Expect = 0.69
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Frame = +3
Query: 234 NDTILQSFGG---VSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMG-KRLI 401
N T+ ++F G + +C+V G+S+GY FV+F A+ E +N ++ K++
Sbjct: 147 NKTLHEAFSGCGTIVSCKVATDHM-GQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIF 205
Query: 402 KAAYIPPDKRRWA 440
++ ++R A
Sbjct: 206 VGPFLRKEERESA 218
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 31.1 bits (67), Expect = 0.91
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPDKR 431
+FG +S ++ + T RS+G A++ + P A E ++N RL+ +I P K
Sbjct: 283 TFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEELDNSSFQGRLL---HILPAKH 339
Query: 432 R 434
R
Sbjct: 340 R 340
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 31.1 bits (67), Expect = 0.91
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPDK 428
+ FG V + + R +G+ +G+AFVEF D A +MN R I +
Sbjct: 68 ERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVVVASESR 127
Query: 429 RR 434
+R
Sbjct: 128 KR 129
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 413
+ +G V + + R RRTG S+G+AFV + A E ++ ++ R I +
Sbjct: 35 LFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQF 91
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 413
+ +G V + + R RRTG S+G+AFV + A E ++ ++ R I +
Sbjct: 35 LFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQF 91
>At5g25780.1 68418.m03060 eukaryotic translation initiation factor 3
subunit 9, putative / eIF-3 eta, putative / eIF3b,
putative nearly identical to SP|Q9C5Z1 Eukaryotic
translation initiation factor 3 subunit 9 (eIF-3 eta)
(eIF3 p110) (eIF3b) {Arabidopsis thaliana}
Length = 714
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +3
Query: 297 TGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPD-KRRWAMRYTWN-PQNN 470
T + GY F+EF+ P AQ E + Y + K I A + D R ++ W PQ
Sbjct: 102 TKMTLGYCFIEFNTPQEAQNAKEKSHGYKLDKSHIFAVNMFDDFDRLMNVKEEWEPPQER 161
Query: 471 P 473
P
Sbjct: 162 P 162
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPP 422
+ + G V + + ++ TG KG+AFV+F A + N ++ GKR I + P
Sbjct: 350 VFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWAVP 409
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 401
FG + + RV+ R+TGR++ +AF+ F G+R+I
Sbjct: 235 FGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRII 283
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 413
+ Q FG V + V R+ +TG S+G +V A+I +++ +G R ++ Y
Sbjct: 127 MFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRY 183
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 297 TGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPD-KRRWAMRYTWNP 461
T + GY F+EF+ P AQ E + Y + K I A + D R ++ W P
Sbjct: 101 TKMTLGYCFIEFNTPQEAQNAKEKSHGYKLDKSHIFAVNMFDDFDRLMNVKEEWEP 156
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 258 GGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAETMNNYLMGKRL 398
GGV + R++ + TG+ +G A+ +F D +A +A+ + GK++
Sbjct: 675 GGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMF-FGKKI 721
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 258 GGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAETMNNYLMGKRL 398
GGV + R++ + TG+ +G A+ +F D +A +A+ + GK++
Sbjct: 675 GGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMF-FGKKI 721
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHD 338
I FG V + ++I R TG+S+ + FV F +
Sbjct: 26 IFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEE 57
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 258 GGVSNCRVIRSRRTGRSKGYAFVEFHD 338
G V + R+I R + RSKG ++EF+D
Sbjct: 192 GKVRDVRLIMDRNSRRSKGVGYIEFYD 218
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/33 (30%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Frame = +3
Query: 237 DTILQSF---GGVSNCRVIRSRRTGRSKGYAFV 326
+T++++F G + +C+ + + +G+SKGY F+
Sbjct: 154 ETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/33 (30%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Frame = +3
Query: 237 DTILQSF---GGVSNCRVIRSRRTGRSKGYAFV 326
+T++++F G + +C+ + + +G+SKGY F+
Sbjct: 154 ETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/33 (30%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Frame = +3
Query: 237 DTILQSF---GGVSNCRVIRSRRTGRSKGYAFV 326
+T++++F G + +C+ + + +G+SKGY F+
Sbjct: 154 ETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 29.5 bits (63), Expect = 2.8
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEF 332
+ +G + +C+ + + +G+SKGY F+ F
Sbjct: 149 KQYGEIEDCKCVVDKVSGQSKGYGFILF 176
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 258 GGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGK 392
G V + R+I R + RS+G +VEF+D + L+G+
Sbjct: 206 GKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIALSGQPLLGQ 250
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPP 422
I +FG V + + R +G+ +VEF A A+ M+ + +++KA + P
Sbjct: 117 IFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATFTLP 176
Query: 423 DKRR 434
+++
Sbjct: 177 PRQK 180
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPP 422
I +FG V + + R +G+ +VEF A A+ M+ + +++KA + P
Sbjct: 117 IFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATFTLP 176
Query: 423 DKRR 434
+++
Sbjct: 177 PRQK 180
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 264 VSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGK 392
+++ R+ +++ TG KGYA V+F D I + + G+
Sbjct: 287 INSVRLGKNKETGEFKGYAHVDFKDSVSVAIALKLDQQVICGR 329
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 29.1 bits (62), Expect = 3.7
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEF 332
+S+G + ++ + T + KGYAF+E+
Sbjct: 159 ESYGPIKRVHLVTDQLTNKPKGYAFIEY 186
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 231 SNDTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN-YLMGKRLIKA 407
SND + FG + IR T + + FVEF+D A+ + +N + GKR+
Sbjct: 265 SNDDLHGIFGAHGEIKEIRE--TPHKRHHKFVEFYDVRGAEAALKALNRCEIAGKRIKVE 322
Query: 408 AYIPPDKRRWAM 443
P RR M
Sbjct: 323 PSRPGGARRSLM 334
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 231 SNDTILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN-YLMGKRLIKA 407
SND + FG + IR T + + FVEF+D A+ + +N + GKR+
Sbjct: 265 SNDDLHGIFGAHGEIKEIRE--TPHKRHHKFVEFYDVRGAEAALKALNRCEIAGKRIKVE 322
Query: 408 AYIPPDKRRWAM 443
P RR M
Sbjct: 323 PSRPGGARRSLM 334
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +3
Query: 255 FGGVSNCRVIRSRRTGRSKGYAFVEFH-DPAVAQIVAETMNNYLMGKRL-IKAA 410
FG + +++R TGRS+G+ FV + + V ++A+ L G ++ IK A
Sbjct: 153 FGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKA 206
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 231 SNDTILQSFG--GVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNY 380
++D + +FG G V+ G+SKG+ FV F + A E++N +
Sbjct: 41 TDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGH 92
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = +3
Query: 249 QSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 401
+ +G + +V+ + +GRS+G+ F+ F + MN + R I
Sbjct: 28 EKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTI 78
>At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative similar to Heterogeneous
nuclear ribonucleoprotein SP|P55795, SP|P31943,
SP|P52597 {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM) domain
Length = 289
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 243 ILQSFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 404
I + F G++ V+ + G+ G AFV F P +I + + + MG+R ++
Sbjct: 99 IFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQ-RDRHNMGRRYVE 151
>At5g18700.1 68418.m02219 protein kinase-related contains protein
kinase domain, INTERPRO:IPR000719
Length = 1366
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 339 PAVAQIVAETMNNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQNNPVLNTNLKLK 500
P++ I+ E L GK L+ A++ + RRW + N + PV++ K K
Sbjct: 842 PSLLSII-EQGTEVLRGKALLFVAFLCKNSRRWLTNFFCNARFLPVVDRLAKEK 894
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 27.9 bits (59), Expect = 8.5
Identities = 22/93 (23%), Positives = 39/93 (41%)
Frame = +3
Query: 147 STRRENKKKETCKRACLFGTYPTWIL*ASNDTILQSFGGVSNCRVIRSRRTGRSKGYAFV 326
S +EN K+ + + A + I SN+ + F R +R RT ++
Sbjct: 282 SIPKENPKENSSEGALWVNNLDSSI---SNEELHGIFSSYGEIREVR--RTMHENSQVYI 336
Query: 327 EFHDPAVAQIVAETMNNYLMGKRLIKAAYIPPD 425
EF D A++ + +N + R +K A P+
Sbjct: 337 EFFDVRKAKVALQGLNGLEVAGRQLKLAPTCPE 369
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +3
Query: 126 SDPRHP*STRRENKKKETCKRACLF-GTYPTWIL*ASNDTILQSFGGVSNCRVIRS-RRT 299
SD + P R N ++E + +F G PTWI + + FG + N +I+
Sbjct: 145 SDTKPPEEETR-NPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEV 203
Query: 300 GRSKGYAFV 326
++ G+ F+
Sbjct: 204 EKNAGFGFI 212
>At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 214
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 150 TRRENKKKETCKRACLFGTYPTWIL*ASNDTILQS 254
TRR+ KE + C+ PTW L +N+T L S
Sbjct: 37 TRRKRTLKERLRFKCIGCCGPTWNLRLTNNTTLHS 71
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 27.9 bits (59), Expect = 8.5
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = +3
Query: 258 GGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN-NYLMGKRLI----KAAYIPP 422
G V + R+I S + + GY FVEF P +A + E N YL ++ K A PP
Sbjct: 706 GEVVSVRLIVSPES-KHVGYGFVEFASPCLANMALEKKNGEYLHDHKIFLGVAKTAPYPP 764
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 252 SFGGVSNCRVIRSRRTGRSKGYAFVEFHD 338
S G + N V R TG SKG A++EF +
Sbjct: 427 SCGEIKNVSVPIDRDTGNSKGIAYLEFSE 455
>At1g11000.1 68414.m01263 seven transmembrane MLO family protein /
MLO-like protein 4 (MLO4) identical to membrane protein
Mlo4 [Arabidopsis thaliana] gi|14091578|gb|AAK53797;
similar to MLO protein SWISS-PROT:P93766,
NCBI_gi:1877221 [Hordeum vulgare][Barley]
Length = 573
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 474 QDCSEGSMCISWPIFVYQVVC 412
+D G + ISWP++VY +VC
Sbjct: 269 EDEFHGIVGISWPLWVYAIVC 289
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,094,348
Number of Sequences: 28952
Number of extensions: 229292
Number of successful extensions: 721
Number of sequences better than 10.0: 147
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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