Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021234
         (771 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    38   7e-05
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    25   0.67 
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    24   1.2  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    24   1.2  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   1.2  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   2.0  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   3.6  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   4.7  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.7  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   4.7  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   6.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   6.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   6.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   6.2  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   8.2  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 38.3 bits (85), Expect = 7e-05
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 13/92 (14%)
 Frame = +2

Query: 272 LNVSLNKLYNL----------PRGFGSFPVLEILDLTYNNLNEKVLPGNFF--IMDSLRA 415
           +N+S NKL NL            G G    +++LDL++NN+    +   FF  +  SL  
Sbjct: 195 VNMSHNKLINLVVAPSVPFEQDTGLGGLQNIKVLDLSFNNITS--VAKQFFRPVELSLMQ 252

Query: 416 LYLGDNDFEFLPPEI-GNLKNLQILSMRENDL 508
           LYLG N       ++ GN+ +LQ+L +  N L
Sbjct: 253 LYLGHNKLLNATKDLFGNMPHLQVLDLSHNSL 284



 Score = 34.7 bits (76), Expect = 8e-04
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +2

Query: 287 NKLYNLPRG-FGSFPVLEILDLTYNNLNEKVLPGNFFIMDSLRALYLGDNDFEFLPPEIG 463
           NKL N  +  FG+ P L++LDL++N+L E      F     L+ L    N    +P ++ 
Sbjct: 258 NKLLNATKDLFGNMPHLQVLDLSHNSLYELDF-DTFRNTKKLQWLDTSHNRISEIPNDLF 316

Query: 464 N-LKNLQILSMRENDLSKFP 520
             L NL+I+    N L   P
Sbjct: 317 RFLGNLRIVDFSHNRLRSLP 336



 Score = 33.9 bits (74), Expect = 0.001
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
 Frame = +2

Query: 254 IPKLRILNVSLNKLYNLPRGFGSFPVLE--ILDLTYNNLNEKVLPGNFFIMDSLRALYLG 427
           IP+L  LN+  N    L     SF  LE  +L L  +N++   +P       +L +L L 
Sbjct: 417 IPRLASLNLGHNSQLTLEINGLSFQGLEYTLLHLNLDNVSLSQVPA--LSTPNLLSLSLA 474

Query: 428 DNDFEFLPPEI-GNLKNLQILSMRENDLSKFP 520
            N    +  E+ GN+ +L+ L++  NDLS  P
Sbjct: 475 FNSLPTVALEVAGNISSLRYLNLDYNDLSAVP 506



 Score = 27.5 bits (58), Expect = 0.13
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
 Frame = +2

Query: 263 LRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLP--GNFFIMDSLRALYLGDND 436
           L + NVSL+++  L     S P L  L L +N+L    L   GN   + SLR L L  ND
Sbjct: 450 LNLDNVSLSQVPAL-----STPNLLSLSLAFNSLPTVALEVAGN---ISSLRYLNLDYND 501

Query: 437 FEFLPPEIGNLKNLQILSMRENDLS 511
              +P    +L  L+ LS+  N ++
Sbjct: 502 LSAVPIVTHSLTELRHLSLEGNPIT 526



 Score = 27.1 bits (57), Expect = 0.17
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 254 IPKLRILNVSLNKLYNLP-RGFGSFPVLEILDLTYNNLN 367
           +  L+ LN+  NK+  +    F + P LE LDL YN+++
Sbjct: 139 LKSLKRLNLKGNKIATIAYETFQNLPELEDLDLAYNSIS 177



 Score = 25.0 bits (52), Expect = 0.67
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 263 LRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNE 370
           LRI++ S N+L +LP        LE LD+++N L +
Sbjct: 322 LRIVDFSHNRLRSLPDNLFRETGLERLDVSHNLLGK 357



 Score = 21.4 bits (43), Expect = 8.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 57  EIDLVDKGISSLEEIPGLFSLENITRLSLSHNKISVV 167
           E+DL    ISSL     L   + ++ L LS+N++  +
Sbjct: 373 ELDLSWNSISSLSHGGQLARFKCLSWLDLSYNRLGQI 409


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -1

Query: 297 YSLFNETLRILNLGMMIS*LEALECCYWPSLEFLSC 190
           ++ F++ + + +LG   + +E L   YW ++EF  C
Sbjct: 374 FAQFSQEIGLASLGASDAEIEKLSTVYWFTVEFGLC 409


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/43 (23%), Positives = 24/43 (55%)
 Frame = -3

Query: 217 LAKFRISKLLKLASAAGTTEILLWLRDRRVMFSRENKPGISSR 89
           L +  I+  L+L+      ++ +W ++RRV + +E+ P  + +
Sbjct: 145 LRRIEIATCLRLSEK----QVKIWFQNRRVKYKKEDLPAAAGK 183


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -3

Query: 190 LKLASAAGTTE--ILLWLRDRRVMFSRENK 107
           +++A A   TE  I +W ++RR+ + +ENK
Sbjct: 273 IEIAHALCLTERQIKIWFQNRRMKWKKENK 302


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -3

Query: 190 LKLASAAGTTE--ILLWLRDRRVMFSRENK 107
           +++A A   TE  I +W ++RR+ + +ENK
Sbjct: 275 IEIAHALCLTERQIKIWFQNRRMKWKKENK 304


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 202 ISKLLKLASAAGTTE--ILLWLRDRRVMFSRENKPGISSRLDI 80
           I +  +LA   G +E  I +W ++RR    ++NK  I  +  I
Sbjct: 184 IKRKSELAENLGLSERQIKIWFQNRRAKERKQNKKRIEEKSQI 226


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +2

Query: 245 LIIIPKLRILNVSLNKLYNLPRGFGSFPVLE--ILDLTYNNLNEKVLPGNFFIMDSLRAL 418
           +I++P+ ++ ++ + K YN+         L   I  + YN ++ K   G     +S R  
Sbjct: 313 IILVPEEQVYHLEIEKYYNILYFCRIMVYLNSAINPILYNLMSSKFRTGFIICSESNRKF 372

Query: 419 Y 421
           Y
Sbjct: 373 Y 373


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -3

Query: 160 EILLWLRDRRVMFSRENK 107
           +I +W ++RR+ + ++NK
Sbjct: 276 QIKIWFQNRRMKWKKDNK 293


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 686 GRPTCWTIC 712
           G+PTCW  C
Sbjct: 881 GKPTCWREC 889


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -3

Query: 160 EILLWLRDRRVMFSRENK 107
           +I +W ++RR+ + ++NK
Sbjct: 276 QIKIWFQNRRMKWKKDNK 293


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 592  EIGTLDLASNKSVLRLEGN 648
            +IGTLD+A  K   +L  N
Sbjct: 1430 QIGTLDVAFKKRFAKLNAN 1448


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 592  EIGTLDLASNKSVLRLEGN 648
            +IGTLD+A  K   +L  N
Sbjct: 1430 QIGTLDVAFKKRFAKLNAN 1448


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 592  EIGTLDLASNKSVLRLEGN 648
            +IGTLD+A  K   +L  N
Sbjct: 1430 QIGTLDVAFKKRFAKLNAN 1448


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 592  EIGTLDLASNKSVLRLEGN 648
            +IGTLD+A  K   +L  N
Sbjct: 1430 QIGTLDVAFKKRFAKLNAN 1448


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +1

Query: 271 PQCFIKQTV*LAKRLWFLPC 330
           P C+I   + L    WF+ C
Sbjct: 217 PYCYINCLIYLIGGFWFMQC 236


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,035
Number of Sequences: 336
Number of extensions: 3761
Number of successful extensions: 24
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)