Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021234
(771 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 49 8e-07
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 40 4e-04
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 40 4e-04
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo... 34 0.026
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 29 0.56
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 27 3.0
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch... 27 3.0
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S... 27 3.9
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce... 27 3.9
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 27 3.9
SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces... 26 6.9
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 26 6.9
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.1
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.1
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 9.1
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 48.8 bits (111), Expect = 8e-07
Identities = 28/89 (31%), Positives = 46/89 (51%)
Frame = +2
Query: 242 QLIIIPKLRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSLRALY 421
+++ +LR LN+ N L P LEILD++ N + K LP +F + +L+ L
Sbjct: 70 EILKFTRLRYLNIRSNVLREFPESLCRLESLEILDISRNKI--KQLPESFGALMNLKVLS 127
Query: 422 LGDNDFEFLPPEIGNLKNLQILSMRENDL 508
+ N LP I ++ NL+IL + N +
Sbjct: 128 ISKNRLFELPTYIAHMPNLEILKIENNHI 156
Score = 46.0 bits (104), Expect = 6e-06
Identities = 26/71 (36%), Positives = 38/71 (53%)
Frame = +2
Query: 254 IPKLRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSLRALYLGDN 433
+ L IL++S NK+ LP FG+ L++L ++ N L E LP M +L L + +N
Sbjct: 97 LESLEILDISRNKIKQLPESFGALMNLKVLSISKNRLFE--LPTYIAHMPNLEILKIENN 154
Query: 434 DFEFLPPEIGN 466
F PP I N
Sbjct: 155 HIVFPPPHIAN 165
Score = 34.3 bits (75), Expect = 0.020
Identities = 22/62 (35%), Positives = 31/62 (50%)
Frame = +2
Query: 341 LDLTYNNLNEKVLPGNFFIMDSLRALYLGDNDFEFLPPEIGNLKNLQILSMRENDLSKFP 520
LDL++ NL E I + L LG N + + PEI L+ L++R N L +FP
Sbjct: 32 LDLSHLNLRELPYEQLERIQGRIARLALGHNFIKSIGPEILKFTRLRYLNIRSNVLREFP 91
Query: 521 GS 526
S
Sbjct: 92 ES 93
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 493 ARERPVEVPRELGQLARLRELHLQGNRLVVLPPEIGTLDL 612
++ R E+P + + L L ++ N +V PP I DL
Sbjct: 129 SKNRLFELPTYIAHMPNLEILKIENNHIVFPPPHIANNDL 168
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 39.9 bits (89), Expect = 4e-04
Identities = 28/83 (33%), Positives = 40/83 (48%)
Frame = +2
Query: 263 LRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSLRALYLGDNDFE 442
L+ LN++ NKL+ LP L LDL+YNN P + L L N
Sbjct: 504 LKELNIANNKLFFLPHSTRYLVNLTYLDLSYNNF--VTFPLIITELSQLETLNFSHNLLS 561
Query: 443 FLPPEIGNLKNLQILSMRENDLS 511
+ +IG+L L+ L ++ NDLS
Sbjct: 562 QISSKIGSLVKLKHLYLQFNDLS 584
Score = 37.1 bits (82), Expect = 0.003
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +2
Query: 263 LRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSLRALYLGDNDFE 442
L L++S N P LE L+ ++N L++ + + L+ LYL ND
Sbjct: 527 LTYLDLSYNNFVTFPLIITELSQLETLNFSHNLLSQ--ISSKIGSLVKLKHLYLQFNDLS 584
Query: 443 F-LPPEIGNLKNLQILSMRENDLS 511
LP EIG LKNL+ + + N ++
Sbjct: 585 NRLPQEIGLLKNLETIDLSYNAIT 608
Score = 33.5 bits (73), Expect = 0.034
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Frame = +2
Query: 260 KLRILNVSLNKLYNLPRG--FGSFPVLEILDLTYNNLNE-KVLPGNFFIMDSLRALYLGD 430
KL+ L++S N PRG + LE+L+++ N++ E L + +SL+ L + +
Sbjct: 454 KLKRLDISNN--LRSPRGKPITALRQLEVLNMSRNDIYELDPLIFSGLSRNSLKELNIAN 511
Query: 431 NDFEFLPPEIGNLKNLQILSMRENDLSKFP 520
N FLP L NL L + N+ FP
Sbjct: 512 NKLFFLPHSTRYLVNLTYLDLSYNNFVTFP 541
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 39.9 bits (89), Expect = 4e-04
Identities = 20/49 (40%), Positives = 24/49 (48%)
Frame = +2
Query: 386 NFFIMDSLRALYLGDNDFEFLPPEIGNLKNLQILSMRENDLSKFPGSWG 532
+ F L LY+ N+ LPPEIG LKNL IL N + P G
Sbjct: 176 DLFKFSFLTELYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPELG 224
Score = 37.5 bits (83), Expect = 0.002
Identities = 23/56 (41%), Positives = 32/56 (57%)
Frame = +1
Query: 514 VPRELGQLARLRELHLQGNRLVVLPPEIGTLDLASNKSVLRLEGNFWVPPIEDQLK 681
+P ELG L LRE+ L N + V+P E+GTL +L +EGN P++D K
Sbjct: 219 IPPELGLLTELREVLLFDNMISVIPAELGTL---FQLKILGIEGN----PLQDVYK 267
Score = 33.9 bits (74), Expect = 0.026
Identities = 23/81 (28%), Positives = 37/81 (45%)
Frame = +2
Query: 293 LYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSLRALYLGDNDFEFLPPEIGNLK 472
L N+ F L L + +NNL LP + +L L N + +PPE+G L
Sbjct: 170 LRNVSTDLFKFSFLTELYINHNNLTR--LPPEIGKLKNLVILDASGNSIKTIPPELGLLT 227
Query: 473 NLQILSMRENDLSKFPGSWGS 535
L+ + + +N +S P G+
Sbjct: 228 ELREVLLFDNMISVIPAELGT 248
Score = 32.3 bits (70), Expect = 0.079
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = +1
Query: 460 WKFEESTNFVDARERPVEVPRELGQLARLRELHLQGNRLVVLPPEIGTLDLASNKSVLRL 639
+KF T +P E+G+L L L GN + +PPE+G L + VL
Sbjct: 178 FKFSFLTELYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPELGL--LTELREVLLF 235
Query: 640 EGNFWVPPIE 669
+ V P E
Sbjct: 236 DNMISVIPAE 245
Score = 29.9 bits (64), Expect = 0.42
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +1
Query: 514 VPRELGQLARLRELHLQGNRLVVLPPEIGTLDLASNKSVLRLEGN 648
V +L + + L EL++ N L LPPEIG L N +L GN
Sbjct: 173 VSTDLFKFSFLTELYINHNNLTRLPPEIGKL---KNLVILDASGN 214
>SPBC1861.08c |||U2 snRNP-associated protein Lea1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 33.9 bits (74), Expect = 0.026
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 329 VLEILDLTYNNLNEKVLPGNFFIMDSLRALYLGDNDFEFLPPEIGN-LKNLQILSMREND 505
V + +D T N++ GNF M L+ L G+N + P+IG L NL+ LS+ +N
Sbjct: 42 VHDAIDFTDNDIRYL---GNFPRMKRLQTLLCGNNRITAIAPDIGKVLPNLKTLSLAQNH 98
Query: 506 LSK 514
L +
Sbjct: 99 LQE 101
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 29.5 bits (63), Expect = 0.56
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 157 ILLWLRDRRVMFSRENKPGISSRLDIPLSTKSI 59
IL W+ + MFSR+ P ++S L +P K I
Sbjct: 89 ILSWISPLKKMFSRKKSPTLTSSLPVPGMPKGI 121
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 27.1 bits (57), Expect = 3.0
Identities = 23/99 (23%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Frame = +2
Query: 236 SSQLIIIPKLRILNVSLNKLYNLPRGFGSFPVLEILD-LTYNNLNEKVLPGNFFI--MDS 406
S+++ L L+ L +LY G SF +E+L+ L +++ ++ ++ + +
Sbjct: 201 SNRITQFENLACLSHCLRELYVSHNGLTSFSGIEVLENLEILDVSNNMIKHLSYLAGLKN 260
Query: 407 LRALYLGDND---FEFLPPEIGNLKNLQILSMRENDLSK 514
L L+ +N+ F+ + E+ LK L+ + N L K
Sbjct: 261 LVELWASNNELSSFQEIEDELSGLKKLETVYFEGNPLQK 299
>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 416 KHGDCP**RSSQVILFHSNYCMLDPIS 336
+HG P SS ++ ++ NYC P+S
Sbjct: 210 EHGSSPLESSSGLVYYNRNYCSTSPLS 236
>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
L3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 326
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 281 SLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPG 385
S KL+++ + FG F VLE + Y L E+ + G
Sbjct: 81 SNEKLWSIGKVFGDFYVLEYIKCKYPRLPEEAVHG 115
>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 398
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 607 DLASNK-SVLRLEGNFWVPPIEDQLKLGPSHVL 702
+LA K ++L ++ F PPI+D L LG +V+
Sbjct: 175 ELAKKKGAILVVDSTFAPPPIQDALVLGADYVV 207
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -1
Query: 609 VQCSDLRRQHDEAVPLQVQLAEARQLPQLPGNFDRSFSRIDKICR 475
+ + R+HD V V+ AEARQL + RS I K+CR
Sbjct: 365 LDAKSIERRHD-LVSALVEDAEARQLLLDDDHLLRSIPDIPKLCR 408
>SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 160
Score = 25.8 bits (54), Expect = 6.9
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +1
Query: 508 VEVPRELGQLARLRELHLQGNRLVVLPPEIGTLDLASNKSVLRLEGNFWV--PPIEDQLK 681
V++P E G++ L++ H+ + + P I D +SNKS + G F V P E +
Sbjct: 51 VDIPAEDGEMGILKD-HVPMIQCLK-PGVISVTDESSNKSKYFISGGFAVQQPSNELSIT 108
Query: 682 LGPSHVLDYLRSETYKVLYSRH 747
+ ++ L+ S L +H
Sbjct: 109 VPEAYKLEDFSSSVANQLLEKH 130
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 78 GISSLEEIPGLFSLENITRLSLSHNKIS 161
G + +EEI + SL+N+ L L +NK++
Sbjct: 743 GNNEIEEIEEISSLQNLMVLQLDNNKLT 770
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 9.1
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 489 DKICRFFKFPISGGRNSKSLSPKYKARRLSIIKKFPGNTFSFKL 358
+K+ + I GGRNS SL+P A + + FP + SF L
Sbjct: 681 EKLMSPYNKSIGGGRNSNSLTP--NANLGADVSFFPTDDTSFLL 722
>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 515
Score = 25.4 bits (53), Expect = 9.1
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 704 SSTWDGPSLSWSSMGGTQKLPSSLSTDLLLARSNVPISGG 585
+S WD + S + G L SLS D+ RSN P+ G
Sbjct: 165 TSDWDEQNEYVSEVEGDYNLLGSLSNDIQF-RSNPPVISG 203
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 9.1
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Frame = -1
Query: 504 SFSRIDKICRFFKFPISGGRNSKSLSPKYKARRLSIIKKFP-GNTFS---FKLLYVRSNI 337
S +DK+ K+ + + YK +R SI++KFP N S LL +
Sbjct: 154 SLDNLDKV----KYLLHDSSSLTKAFDSYKEKRPSIVEKFPLHNLLSRWIHSLLIKSISY 209
Query: 336 SSTGKEPKPLGKLYSLFNETLRILN 262
+ T K+ + L ++ N +L +L+
Sbjct: 210 AQTEKQEAKVTPLLAIINMSLVLLS 234
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,029
Number of Sequences: 5004
Number of extensions: 63375
Number of successful extensions: 212
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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