Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021233
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce...    39   0.001
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    31   0.19 
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    31   0.25 
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    30   0.33 
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   1.8  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    28   1.8  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   3.1  
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S...    26   5.4  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   7.1  

>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = +2

Query: 518 EIFFFKEGAVVFWNCSELEASNV---LEFVKPYELESYPREVIEKEREIMTYIYQPNSKK 688
           EIF F  G VVFWN S  +  ++   L F     L   P    E E E + + Y PN+K+
Sbjct: 240 EIFVFSYGVVVFWNFSLSQEKDILADLTFGGDNSLMVKPLAEEECEIEDLHFHYAPNTKR 299

Query: 689 CHLQESCFIMVPERDNSLE 745
             +     I +P  DN ++
Sbjct: 300 PRIYND-MIHIPSADNKMK 317


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 515 REIFFFKEGAVVFWNCSELEASNVLEFVKPYELESYPREVIEKE--REIMTYIYQP 676
           RE+F F  G VV W  +  E    L  +  +E+E    E +E E     +T +YQP
Sbjct: 156 REVFCFTYGVVVLWGYTIDEEHRFLRELGRFEIEKLKIEDMEVEEFNYYITTLYQP 211


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 566 ELEASNVLEFVKPYELESYPREVIEKEREIMTYIYQPNSKKCHLQESCFIMVPERDNSLE 745
           EL+ +  L   K  E+ +  R++ EKE     +  + NS   HLQE   I+  + D   +
Sbjct: 300 ELDVAQDLLTEKEDEIATLKRQIEEKENSSSAFENEENSSYVHLQEDYAILQAKCDEFAD 359

Query: 746 R 748
           R
Sbjct: 360 R 360


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 112 MLKTAIRGRIACVLPT-GAISPKQQFISIKSVYIPVLN 222
           +L  A+     CV+P+ G + PK++FIS + V IP  N
Sbjct: 120 LLDVALANPKDCVVPSSGLLMPKEEFISNEEVGIPATN 157


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 564 PSSKPVMSLSLLSPMNLRAIHGKSLRRKEK 653
           P+SKPV+S   LS + LR   GK L++  K
Sbjct: 286 PTSKPVVSWDSLSDIQLRLNVGKVLKKSVK 315


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 360 KNVLLSDSNSQRSIFYALSSFSKEYWHFLKP 268
           +N+++  + SQRS+   L + S  Y HF  P
Sbjct: 226 QNIVIEKNASQRSVSEPLHNLSSRYSHFTSP 256


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 408 KEAL--VEQKLYEPGNLKTVEIGNVVVANAVYNIGSNRERYFSSRKEP 545
           KE L  +E + Y P  + T ++  V V+  VY+   N    FS+ K P
Sbjct: 246 KETLKAIENEFYHPQGVSTQKMPEVFVSGLVYSPDCNVAFTFSNTKGP 293


>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
           Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 318 FYALSSFSKEYWHFLKPQ 265
           +Y LSSF   YW+ L PQ
Sbjct: 263 YYQLSSFEVRYWNNLLPQ 280


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 566 ELEASNVLEFVKPYELESYPRE 631
           E   +NV E + P+E ES+P E
Sbjct: 154 ESPGNNVFEAISPHERESFPSE 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,282,742
Number of Sequences: 5004
Number of extensions: 68775
Number of successful extensions: 207
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)