Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021233
         (796 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0172 - 15406961-15407488,15408068-15408187,15408308-154085...    28   7.4  
07_03_0848 + 21992610-21992724,21993009-21993137,21993625-219937...    28   7.4  
03_05_0999 - 29583959-29584711,29584797-29585021,29585163-295853...    28   7.4  
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937...    28   9.8  

>10_08_0172 -
           15406961-15407488,15408068-15408187,15408308-15408568,
           15408684-15409112
          Length = 445

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 581 NVLEFVKPYELESYPREVIEKEREIMTYIYQPNSKKCHLQESCFI 715
           N++E+VKPY  +S   E+I   R   +Y  +  +K   +   C +
Sbjct: 321 NLIEWVKPYSTDSKKLEIIMDPRLEGSYSLKSAAKLASVANKCLV 365


>07_03_0848 +
           21992610-21992724,21993009-21993137,21993625-21993723,
           21993833-21993885,21994157-21994230,21994382-21994433
          Length = 173

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 569 LEASNVLEFVKPYELESYPREVI 637
           +  +NV +F KP E+ SYP++V+
Sbjct: 93  ISIANVADFAKPPEMISYPQQVV 115


>03_05_0999 -
           29583959-29584711,29584797-29585021,29585163-29585360,
           29585472-29586056
          Length = 586

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 573 SSSEQFQNTTAPSLKKNISLCS-SQYCKPHWLR 478
           SSS      T+ S +++ SL S +QYCKP  LR
Sbjct: 13  SSSSSSNTATSTSSRRSFSLFSKNQYCKPRPLR 45


>02_04_0516 +
           23593088-23593116,23593209-23593336,23593527-23593714,
           23593861-23593919,23594997-23595345,23596081-23596333,
           23596404-23597476
          Length = 692

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/70 (22%), Positives = 34/70 (48%)
 Frame = +3

Query: 306 IVHKKSIAENLSQKEGHFLTLMYATANSYDLKALKEALVEQKLYEPGNLKTVEIGNVVVA 485
           I+H  S+ +NL  K  +FLT+ Y               +EQ++ +P   + ++ G  ++ 
Sbjct: 612 IIHTLSMEDNLLPKYEYFLTMGYPRNELVKFPQYFGYSLEQRI-KPRYARMIDCGVRLIL 670

Query: 486 NAVYNIGSNR 515
           N + ++  +R
Sbjct: 671 NQLLSVSDSR 680


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,993,730
Number of Sequences: 37544
Number of extensions: 393156
Number of successful extensions: 929
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)