Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021233
         (796 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.5  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    23   4.3  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              23   4.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   7.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   7.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   7.5  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   7.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   10.0 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   10.0 
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   10.0 
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   10.0 

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 137 LPRIAVFNILDRYTDILF 84
           +P+I   NI+D+Y+ I+F
Sbjct: 455 MPKIKDVNIIDKYSRIIF 472


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 552 NTTAPSLKKNISLCSSQYCKPH 487
           N T  SLKK+      QYC  H
Sbjct: 4   NFTLQSLKKDFGTYFQQYCLHH 25


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 351 LLSDSNSQRSIFYALSSFSKEYWHFLKPQSAVCITRAK 238
           LL D NS + +    S+ S+E  H    +   C+++ K
Sbjct: 90  LLIDENSVKQLVSDCSTISEENPHLKASKLVQCVSKYK 127


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 688 MSPPRVVLHNGAR 726
           + PPRV+L +GA+
Sbjct: 630 LEPPRVILSSGAK 642


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 688 MSPPRVVLHNGAR 726
           + PPRV+L +GA+
Sbjct: 630 LEPPRVILSSGAK 642


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 688 MSPPRVVLHNGAR 726
           + PPRV+L +GA+
Sbjct: 630 LEPPRVILSSGAK 642


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 377 DCQFLRPQGSEGGIGRAEAVRTRK 448
           +C F+   G E   G  EAV T++
Sbjct: 120 ECTFISVNGKEVHSGNIEAVTTKE 143


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +2

Query: 548 VFWNCSELEASNVLEFVKPYELESYPR 628
           + W+    E     + V+ YE+  YPR
Sbjct: 437 ISWDAPITEIGGDSDLVERYEVRCYPR 463


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 121 TAIRGRIACVLPTGAISPK 177
           +A +GR+    P G++ PK
Sbjct: 194 SATKGRLVITEPVGSVRPK 212


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 144 LCFAYRCDFSQTAI 185
           LCF Y  DF++T +
Sbjct: 130 LCFVYPLDFARTRL 143


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 144 LCFAYRCDFSQTAI 185
           LCF Y  DF++T +
Sbjct: 130 LCFVYPLDFARTRL 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,532
Number of Sequences: 438
Number of extensions: 4848
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)