Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021233
         (796 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33790.1 68415.m04144 pollen Ole e 1 allergen and extensin fa...    32   0.38 
At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein ...    30   2.0  
At3g21590.1 68416.m02723 senescence/dehydration-associated prote...    29   3.6  
At4g20270.1 68417.m02961 leucine-rich repeat transmembrane prote...    28   8.2  

>At2g33790.1 68415.m04144 pollen Ole e 1 allergen and extensin
           family protein similar to arabinogalactan protein
           [Daucus carota] GI:11322245, SP|Q03211 Pistil-specific
           extensin-like protein precursor (PELP) {Nicotiana
           tabacum}; contains Pfam profile PF01190: Pollen proteins
           Ole e I family
          Length = 239

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 315 KKSIAENLSQKEGHFLTLMYATANSYDLKALKEALVE 425
           K SI+E  + K G+F+ L   T  +YD+K  +  LV+
Sbjct: 148 KNSISETKTDKNGYFMLLAPKTVTNYDIKGCRAFLVK 184


>At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
           PF00023: Ankyrin repeat
          Length = 580

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = +2

Query: 566 ELEASNVLEFVKPYELESYPREVIEKEREI----MTYIYQPNSKKCHLQESCFIMVPERD 733
           E E   +LEF    +L+S+ REV EK  ++    + Y  +  SKK  L+E   +MV    
Sbjct: 24  EEETMLLLEFAACDDLDSFKREVEEKGLDLDESGLWYCRRVGSKKMGLEERTPLMVAAMY 83

Query: 734 NSLERFAF 757
            S++   F
Sbjct: 84  GSIKVLTF 91


>At3g21590.1 68416.m02723 senescence/dehydration-associated
           protein-related similar to senescence-associated protein
           12 [Hemerocallis hybrid cultivar]
           gi|3551958|gb|AAC34857; similar to early-responsive to
           dehydration stress ERD7 protein [Arabidopsis thaliana]
           gi|15320412|dbj|BAB63916
          Length = 241

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 23/111 (20%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
 Frame = +3

Query: 312 HKKSIAENLSQKEGHFLTLMYATANSYDLKALKE-ALVEQKLYEPGNLKTVEIGNVVVAN 488
           +K  +A+ ++   GH +  ++  +NSY  K  +E  + E+     G++  ++ G     N
Sbjct: 87  YKNGVAKAIAVGTGHIIKGIFTCSNSYSKKIHEEGTIAEEDEERSGDISQIDGGGNNETN 146

Query: 489 AVYNIGSNRERYFSSRKEP*CSGIVP-SSKPVMSLSLLSPMNLRAIHGKSL 638
               +  N +R     K     G+       ++S S+++P+ +++  GK+L
Sbjct: 147 KKNKLNKNLQRAEKLWKVSEAIGMAALEGGDLVSSSMIAPV-VKSKLGKAL 196


>At4g20270.1 68417.m02961 leucine-rich repeat transmembrane protein
           kinase, putative CLAVATA1 receptor kinase, Arabidopsis
           th., PATX:G2160756
          Length = 992

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -1

Query: 565 GTIPEHYGSFLEEKYLSL 512
           G IP  YGSFL  K+LSL
Sbjct: 188 GEIPRSYGSFLSLKFLSL 205


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,703,389
Number of Sequences: 28952
Number of extensions: 340604
Number of successful extensions: 876
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)