Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021232
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 115 6e-27
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 92 9e-20
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 72 1e-13
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 60 4e-10
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 57 2e-09
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 54 2e-08
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 54 2e-08
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 54 3e-08
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 53 5e-08
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 52 9e-08
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 52 9e-08
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 49 6e-07
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 48 1e-06
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 48 1e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 47 3e-06
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 46 8e-06
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 42 7e-05
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 42 9e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 42 9e-05
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 40 3e-04
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 36 0.005
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 35 0.011
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 35 0.011
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 33 0.058
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 33 0.058
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 29 0.94
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 27 2.9
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 27 2.9
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 2.9
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 5.0
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 25 8.8
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 8.8
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi... 25 8.8
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 8.8
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.8
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 115 bits (277), Expect = 6e-27
Identities = 54/85 (63%), Positives = 64/85 (75%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ G++ TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA QIQQ FG
Sbjct: 160 RDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFG 219
Query: 677 HTSYVRNTCVFGGAPKREQARDLER 751
+S +RNTCV+GG P+ Q RDL R
Sbjct: 220 KSSRIRNTCVYGGVPRGPQIRDLIR 244
Score = 95.9 bits (228), Expect = 5e-21
Identities = 43/85 (50%), Positives = 57/85 (67%)
Frame = +3
Query: 255 LQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSIVEVHNPIQYFEEANFPDYVQQGVK 434
L PF K+FY H V RS EV EYR + E+ V + V P+ FEEA FP+YV + VK
Sbjct: 79 LIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVK 138
Query: 435 TMGYKEPTPIQAQGWPIAMSGKNLV 509
+G++ PTPIQ Q WP+AMSG+++V
Sbjct: 139 QLGFEAPTPIQQQAWPMAMSGRDMV 163
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 91.9 bits (218), Expect = 9e-20
Identities = 41/85 (48%), Positives = 59/85 (69%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ GVAKTGSGKT+A++LP HI +Q P++ G+GPIA+++ PTRELA QI + F
Sbjct: 456 RDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFL 515
Query: 677 HTSYVRNTCVFGGAPKREQARDLER 751
+R C +GGAP ++Q DL+R
Sbjct: 516 KLLNIRACCAYGGAPIKDQIADLKR 540
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +3
Query: 258 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSIVEVHNPIQYFEEANFPDYVQQGVK 434
+ F K+FY + SP EV+E R + + + ++ P+ + + +
Sbjct: 375 EDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVIN 434
Query: 435 TMGYKEPTPIQAQGWPIAMSGKNLV 509
++GY++PT IQAQ P SG++++
Sbjct: 435 SLGYEKPTSIQAQAIPAITSGRDVI 459
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 71.7 bits (168), Expect = 1e-13
Identities = 39/83 (46%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQQVAA 667
K+ G+A+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGN 346
Query: 668 DFGHTSYVRNTCVFGGAPKREQA 736
F R V GG EQ+
Sbjct: 347 KFAEPLGFRCVSVVGGHAFEEQS 369
Score = 40.7 bits (91), Expect = 2e-04
Identities = 16/59 (27%), Positives = 35/59 (59%)
Frame = +3
Query: 333 RNKHEVTVSIVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
+ + +++ ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLI 290
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 59.7 bits (138), Expect = 4e-10
Identities = 32/81 (39%), Positives = 50/81 (61%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ G+A+TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q +
Sbjct: 203 RDVVGIAETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQTYENLNSLI 260
Query: 677 HTSYVRNTCVFGGAPKREQAR 739
+ ++ V+GGAPK EQAR
Sbjct: 261 QGTNLKAVVVYGGAPKSEQAR 281
Score = 43.6 bits (98), Expect = 3e-05
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Frame = +3
Query: 324 EEYRNKHEVTVSIVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 494
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 495 GKNLV 509
G+++V
Sbjct: 202 GRDVV 206
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 57.2 bits (132), Expect = 2e-09
Identities = 29/79 (36%), Positives = 45/79 (56%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ G+A+TGSGKT A+++P I H+ + AL+L+P RELA Q +V DF
Sbjct: 107 RDVVGMARTGSGKTAAFVIPMIEHLKST---LANSNTRALILSPNRELALQTVKVVKDFS 163
Query: 677 HTSYVRNTCVFGGAPKREQ 733
+ +R+ + GG EQ
Sbjct: 164 KGTDLRSVAIVGGVSLEEQ 182
Score = 28.7 bits (61), Expect = 0.94
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +3
Query: 390 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
F+ + + + G+K PTPIQ + P+ + G+++V
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVV 110
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 54.4 bits (125), Expect = 2e-08
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 673
++ G+A+TGSGKT A+ LP I + NN P A+VLAPTRELA QI +
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQISEQFEAI 137
Query: 674 GHTSYVRNTCVFGGAPKREQARDLER 751
G + VR+ + GG QA L +
Sbjct: 138 GGSIGVRSVVIVGGMDMVTQAVALSK 163
Score = 31.9 bits (69), Expect = 0.10
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +3
Query: 390 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
F+E D + + + +G+K PTPIQ + P+ ++ ++++
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVI 87
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 54.4 bits (125), Expect = 2e-08
Identities = 33/81 (40%), Positives = 43/81 (53%)
Frame = +2
Query: 509 GVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 688
G AKTGSGKT A+ LP I + P G AL+L PTRELA QI + A G
Sbjct: 49 GGAKTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQIDEQFAALGANLN 103
Query: 689 VRNTCVFGGAPKREQARDLER 751
+++ + GG Q+ DL +
Sbjct: 104 LKHALIVGGMDMIRQSIDLSK 124
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 53.6 bits (123), Expect = 3e-08
Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 6/81 (7%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPP--IRRGDGPIALVLAPTRELAQQIQQVAADFGH--- 679
A+TGSGKTLAY+LP + + P R G A+++APTREL QQI VA +
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPL 244
Query: 680 TSYVRNTCVFGGAPKR-EQAR 739
+ ++ + V GG K+ E+AR
Sbjct: 245 SHWIVSCNVIGGEKKKSEKAR 265
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 52.8 bits (121), Expect = 5e-08
Identities = 32/85 (37%), Positives = 45/85 (52%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ G AKTGSGKTLA+I+P I ++ + DG ALV++PTRELA Q + G
Sbjct: 77 RDILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIG 135
Query: 677 HTSYVRNTCVFGGAPKREQARDLER 751
+ GG +E+ L R
Sbjct: 136 RLHSFSAGLIIGGNNYKEEKERLSR 160
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 52.0 bits (119), Expect = 9e-08
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 670
++ G AKTGSGKTLA+++P I ++ P R G G ++++PTRELA QI VA +
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRELALQIFGVAKE 183
Query: 671 FGHTSYVRNTCVFGGAPKREQARDL 745
+ V GGA +R +A L
Sbjct: 184 LLKYHHQTFGIVIGGANRRAEADKL 208
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 52.0 bits (119), Expect = 9e-08
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 13/98 (13%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRE 637
++ A+TGSGKT ++ P + + + P P+ + G P L+LAPTRE
Sbjct: 207 RDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRE 266
Query: 638 LAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLER 751
L QI + + F + S+VR V+GGA R Q R +++
Sbjct: 267 LVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQ 304
Score = 39.9 bits (89), Expect = 4e-04
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 378 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 512
P+ F ++ Q +K GY +PTP+Q PI SG++L+A
Sbjct: 167 PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMA 211
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 49.2 bits (112), Expect = 6e-07
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 661
K+ A+TGSGKT AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 52 KDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
Score = 33.9 bits (74), Expect = 0.025
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +3
Query: 390 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 512
F + N +Q+ + +++PT +Q++ P+A+ GK+LVA
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVA 56
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 48.4 bits (110), Expect = 1e-06
Identities = 28/85 (32%), Positives = 43/85 (50%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
K+ G A TGSGKT A+I+P + + +P ++ L+L PTRELA Q VA
Sbjct: 297 KDIVGAAVTGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELAMQCHSVATKIA 354
Query: 677 HTSYVRNTCVFGGAPKREQARDLER 751
+ + GG + Q ++L +
Sbjct: 355 SFTDIMVCLCIGGLSLKLQEQELRK 379
Score = 32.7 bits (71), Expect = 0.058
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +3
Query: 390 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
F+ N + +G+ +G++ PT IQ + P+A+ GK++V
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIV 300
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 48.0 bits (109), Expect = 1e-06
Identities = 27/79 (34%), Positives = 42/79 (53%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
AKTG+GKTLA++L A + P +++L+PTRELA QI + A + + +R
Sbjct: 83 AKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIR 142
Query: 695 NTCVFGGAPKREQARDLER 751
+ GG K + + R
Sbjct: 143 VSYAIGGNSKMREENAIRR 161
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 46.8 bits (106), Expect = 3e-06
Identities = 26/52 (50%), Positives = 32/52 (61%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 670
A TGSGKTLAY+LP + + G G AL++APTRELA QI V +
Sbjct: 45 AVTGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
Score = 34.3 bits (75), Expect = 0.019
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 390 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
F+ N +++ V G+K+ TP+QA P+ + K+LV
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLV 42
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 45.6 bits (103), Expect = 8e-06
Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +2
Query: 509 GVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRELAQQIQQVAADFGHT 682
G A TGSGKTLA+ +P + H +R D ALV+APTRELA QI Q +
Sbjct: 164 GKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELAHQICQHFELIKPS 218
Query: 683 SYVRNTCVFGGAPKREQARDLER 751
+R + GG ++Q R L +
Sbjct: 219 PNIRVMSITGGLAVQKQQRLLNK 241
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 42.3 bits (95), Expect = 7e-05
Identities = 30/103 (29%), Positives = 48/103 (46%)
Frame = +2
Query: 440 GLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 619
G +R A + ++ A++G+GKT + + + I+ +++ AL+
Sbjct: 38 GFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTS--LKQCQ---ALI 92
Query: 620 LAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 748
LAPTRELAQQIQ+V G V GG R+ L+
Sbjct: 93 LAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQ 135
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 41.9 bits (94), Expect = 9e-05
Identities = 24/72 (33%), Positives = 37/72 (51%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
AK G+GKT A+++P++ ++ + + L+L PTRELA Q QV G V+
Sbjct: 88 AKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLILVPTRELALQTSQVCKTLGKHMNVK 142
Query: 695 NTCVFGGAPKRE 730
GG R+
Sbjct: 143 VMVTTGGTTLRD 154
Score = 35.1 bits (77), Expect = 0.011
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 390 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PKRVPAK 536
FE+ + G+ G++ P+PIQ + PIA+SG++++A K K
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGK 94
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 41.9 bits (94), Expect = 9e-05
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 664
++ A TGSGKT+AY+ P + + P G A+++APTREL +QI + A
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTRELCEQIYRQA 135
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 40.3 bits (90), Expect = 3e-04
Identities = 22/62 (35%), Positives = 36/62 (58%)
Frame = +2
Query: 509 GVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 688
G +++G+GKT A+ L + ++ P P A+ LAP+RELA+QI V + G +
Sbjct: 158 GQSQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTE 212
Query: 689 VR 694
V+
Sbjct: 213 VK 214
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 36.3 bits (80), Expect = 0.005
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Frame = +2
Query: 434 DNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 613
D+G + + S + + AK+G GKT ++L + I P+ DG ++
Sbjct: 68 DSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---DGEVS 121
Query: 614 -LVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGG 715
LVL TRELA QI+ A F + VR +GG
Sbjct: 122 VLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGG 157
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 35.1 bits (77), Expect = 0.011
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 652
A TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 180 AATGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 35.1 bits (77), Expect = 0.011
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSYV 691
A++G+GKT + + + I+ +R AL+L+PTRELA QIQ V G H +
Sbjct: 65 AQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNVVLALGDHMNVQ 119
Query: 692 RNTCVFG 712
+ C+ G
Sbjct: 120 CHACIGG 126
Score = 32.3 bits (70), Expect = 0.076
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +3
Query: 324 EEYRNKHEVTVSIVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 503
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 504 LVA 512
++A
Sbjct: 61 VIA 63
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 32.7 bits (71), Expect = 0.058
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 512 VAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 652
V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1212 VLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 32.7 bits (71), Expect = 0.058
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 512 VAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 652
V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1212 VLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 28.7 bits (61), Expect = 0.94
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -3
Query: 243 PIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPV--TR 70
P S V PS F ++ S +S AT+AK + +S KF + V T
Sbjct: 143 PFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVETE 201
Query: 69 HDYFSDLVEDVYLNYGFFLTQG 4
H+Y+++LV+ ++ F +QG
Sbjct: 202 HEYYTELVKVKEASWPLFNSQG 223
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +3
Query: 261 PFNKN----FYDPHPTVLKRSPYEVEEYRNKHEVTVSIVEVHNPIQ 386
PF K FYDP P LK + +E+ N SI +H P+Q
Sbjct: 117 PFTKGGYGGFYDPRPGCLKFTTHEI----NVSYTDTSIPVIHIPVQ 158
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 605 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 748
PI ++ +P E+ ++V D Y+ TC+ P+ E + DLE
Sbjct: 93 PIDIIFSPGEEVF--FERVGGDI--PVYLSGTCIITNIPEEEDSSDLE 136
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 452 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNDTYSYLVFISIL 327
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 312 PYEVEEYRNKHEVTVS 359
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +3
Query: 312 PYEVEEYRNKHEVTVSIVEVHNPIQYFEEANFPDYVQQGVKTMG 443
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -3
Query: 87 IIPVTR-HDYFSDLVEDVYLNYGFFLTQ 7
++PVT+ + D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248
>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 615
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 324 EEYRNKHEVTVSIVEVHNPIQYFEEANFPDYVQQGVKTM 440
E++RN +E S+V+VH FE +Q+ KT+
Sbjct: 534 EKFRNFNEQVTSVVQVHRESVRFETGVATFLLQEVKKTV 572
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 646
TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 543 TGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 441 PLSLHLVAHNQENL--LLQSIE 382
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,108,461
Number of Sequences: 5004
Number of extensions: 67911
Number of successful extensions: 242
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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