Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021232
(752 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 96 3e-20
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 92 4e-19
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 73 3e-13
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 62 6e-10
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 4e-09
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 56 3e-08
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 4e-08
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 54 9e-08
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 54 1e-07
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 3e-07
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 3e-07
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 50 2e-06
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 49 5e-06
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 8e-06
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 47 1e-05
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 45 8e-05
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 42 4e-04
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 40 0.003
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 40 0.003
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 39 0.004
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 38 0.007
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 36 0.027
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 35 0.062
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 34 0.11
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 33 0.33
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 31 0.76
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 31 1.3
SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07) 29 4.1
SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 29 4.1
SB_42908| Best HMM Match : NADH_dehy_S2_C (HMM E-Value=3.5) 28 7.1
SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0) 28 7.1
SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 95.9 bits (228), Expect = 3e-20
Identities = 43/69 (62%), Positives = 54/69 (78%)
Frame = +2
Query: 545 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK 724
+ILP IVHIN+QP ++ GDGPI LVL PTRELAQQ+Q+VA G +R+TC++GGAPK
Sbjct: 113 FILPGIVHINHQPLLQPGDGPIVLVLCPTRELAQQVQEVAYSVGKHCKLRSTCIYGGAPK 172
Query: 725 REQARDLER 751
Q R+LER
Sbjct: 173 GPQIRELER 181
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/56 (46%), Positives = 35/56 (62%)
Frame = +3
Query: 306 RSPYEVEEYRNKHEVTVSIVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 473
R +EV+ YR ++TV+ V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 92.3 bits (219), Expect = 4e-19
Identities = 43/84 (51%), Positives = 57/84 (67%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ G+AKTGSGKT A++ PA+VHI +QP ++ GDGPI L+ APTREL QQI A FG
Sbjct: 555 RDIIGIAKTGSGKTAAFLWPALVHIMDQPELQVGDGPIVLICAPTRELCQQIYTEARRFG 614
Query: 677 HTSYVRNTCVFGGAPKREQARDLE 748
+ VFGG K EQ++ L+
Sbjct: 615 KAYNIHVVAVFGGGNKYEQSKALQ 638
Score = 71.3 bits (167), Expect = 8e-13
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Frame = +3
Query: 258 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSIVEVHNPIQYFEEANFPDYVQQGVKT 437
+PFNKNFY+ HP + K+S E+++ R K + VS P F F + + ++
Sbjct: 475 KPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDEQMMASIRK 534
Query: 438 MGYKEPTPIQAQGWPIAMSGKNLVA*PK----RVPAKRWP 545
+ Y +PT IQ Q PIA+SG++++ K + A WP
Sbjct: 535 LEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWP 574
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 72.9 bits (171), Expect = 3e-13
Identities = 38/80 (47%), Positives = 50/80 (62%), Gaps = 4/80 (5%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGD----GPIALVLAPTRELAQQIQQVA 664
++ GVA+TGSGKT A+ +P +V I P I R + GP AL+LAPTRELAQQI++
Sbjct: 139 RDIIGVAETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRELAQQIEEEI 198
Query: 665 ADFGHTSYVRNTCVFGGAPK 724
FG +R V GGA +
Sbjct: 199 LKFGRPLGIRTVSVIGGADR 218
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = +3
Query: 330 YRNKHEVTVSIVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
+R ++ + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + ++++
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDII 142
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 61.7 bits (143), Expect = 6e-10
Identities = 27/52 (51%), Positives = 37/52 (71%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 652
++ G+A+TGSGKTLAY LP + + + P GD P+AL+L PTREL QQ+
Sbjct: 110 RDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALILTPTRELMQQV 161
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/82 (28%), Positives = 42/82 (51%)
Frame = +3
Query: 264 FNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSIVEVHNPIQYFEEANFPDYVQQGVKTMG 443
F ++YD + V + S V+E R K+ + + + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 444 YKEPTPIQAQGWPIAMSGKNLV 509
++ PTPIQ Q MSG++++
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDII 113
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 59.3 bits (137), Expect = 3e-09
Identities = 33/85 (38%), Positives = 46/85 (54%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ A+TGSGKT AY+LP + + Q P+AL +APTRELA+QI A F
Sbjct: 517 RDLMACAQTGSGKTAAYMLPVLTSLIKQGLNAPPRSPLALCVAPTRELAKQIYIEARKFS 576
Query: 677 HTSYVRNTCVFGGAPKREQARDLER 751
+ ++ +GG QA LER
Sbjct: 577 DHTPIKVCVCYGGVSVPYQASQLER 601
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +3
Query: 309 SPYEVEEYRNKHEVTVSIVEVHNP--IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 482
+P+ ++ N + + + P I F E F + + + GY+ PTP+Q P
Sbjct: 452 APHTGIKFDNYENIPSKVSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALP 511
Query: 483 IAMSGKNLVA 512
I M+G++L+A
Sbjct: 512 IVMAGRDLMA 521
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 58.8 bits (136), Expect = 4e-09
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Frame = +3
Query: 258 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSIVEVHNPIQYFEEANFPDYVQQGVK 434
QPF K+FY P + K +P E +E+R E + V P++ + + + +K
Sbjct: 62 QPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKILDVLK 121
Query: 435 TMGYKEPTPIQAQGWPIAMSGKNLVA---*PKRVPAKRWPTSCQQLC 566
Y++PTPIQAQ P+ MSG++++A P R A + C++ C
Sbjct: 122 KNSYEKPTPIQAQAIPVIMSGRDMIAIVMTPTRELAIQIHRECKKFC 168
Score = 47.2 bits (107), Expect = 1e-05
Identities = 27/73 (36%), Positives = 37/73 (50%)
Frame = +2
Query: 533 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFG 712
K +Y P + P I G IA+V+ PTRELA QI + F + +R CV+G
Sbjct: 121 KKNSYEKPTPIQAQAIPVIMSGRDMIAIVMTPTRELAIQIHRECKKFCKPNNLRCVCVYG 180
Query: 713 GAPKREQARDLER 751
G EQ +L+R
Sbjct: 181 GTGISEQIAELKR 193
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/91 (29%), Positives = 48/91 (52%)
Frame = +3
Query: 279 YDPHPTVLKRSPYEVEEYRNKHEVTVSIVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 458
Y HPT+ + +V++ R+K E+ V V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 459 PIQAQGWPIAMSGKNLVA*PKRVPAKRWPTS 551
PIQ Q P+ +SG++++ K P+S
Sbjct: 221 PIQMQVLPVLLSGRDVMVCASTGSGKLLPSS 251
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 55.6 bits (128), Expect = 4e-08
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINN----QPPIRRGDGPIALVLAPTRELAQQIQQVA 664
++ A+TGSGKT A++LP + + N P A+ +APTRELA QI A
Sbjct: 749 RDVMACAQTGSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELANQIYLEA 808
Query: 665 ADFGHTSYVRNTCVFGGAPKREQARDLE 748
F H + +R +GG Q R L+
Sbjct: 809 RKFAHGTMLRPVVCYGGVSVSHQLRQLQ 836
Score = 42.3 bits (95), Expect = 4e-04
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Frame = +3
Query: 339 KHEVTVSIVEVHNPIQY---FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
K++ +V +NP+++ FEEAN + V+ YK+PTP+Q PI ++G++++
Sbjct: 693 KYDQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVM 752
Query: 510 A 512
A
Sbjct: 753 A 753
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 54.4 bits (125), Expect = 9e-08
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Frame = +2
Query: 431 KDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINN-QPPIRRGDGP 607
+D G+ +S Y ++ G A+TG+GKTL++ LP + + + + +RG P
Sbjct: 89 EDRGITYLFPIQASTFNYIYDGEDVIGQARTGTGKTLSFALPLVEKLQDGKLSQKRGRAP 148
Query: 608 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQ 733
LV+APTRELA+Q+ + S + C++GG P Q
Sbjct: 149 KVLVMAPTRELAKQVGNEFENL--KSNLEVYCIYGGMPYEPQ 188
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 54.0 bits (124), Expect = 1e-07
Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ G AKTGSGKTLA+++P I + Q DG ALV++PTRELA Q +V G
Sbjct: 88 RDVLGAAKTGSGKTLAFLIPIIETLWRQKWTSM-DGLGALVISPTRELAYQTFEVLVKIG 146
Query: 677 HTSYVRNTCVFGGAP-KREQAR 739
+ + + GG K EQ R
Sbjct: 147 NKHDLSAGLIIGGKDLKNEQKR 168
Score = 31.9 bits (69), Expect = 0.57
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 381 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
++ F + G+ G+ PT IQ QG P+A+SG++++
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVL 91
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 52.8 bits (121), Expect = 3e-07
Identities = 31/107 (28%), Positives = 53/107 (49%)
Frame = +2
Query: 431 KDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPI 610
KD G +A ++ G AKTGSGKTLA+++P +V + + + +G
Sbjct: 588 KDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVP-VVELLYKLQFKTRNGTG 646
Query: 611 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLER 751
++++PTREL+ Q VA D + GG ++ +A L++
Sbjct: 647 VIIISPTRELSLQTYGVARDLLKHHNFTYGIIMGGVNRKAEAERLQK 693
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 52.8 bits (121), Expect = 3e-07
Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRG-DGPIALVLAPTRELAQQIQQVAADFGHTSYV 691
A++G+GKT + + + I+ + G D ALVLAPTRELAQQIQ+V G +V
Sbjct: 129 AQSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELAQQIQKVVLALGDYMHV 188
Query: 692 RNTCVFGGAPKREQARDLE 748
+ GG RE LE
Sbjct: 189 KCHACIGGTNVREDRMKLE 207
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 50.4 bits (115), Expect = 2e-06
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRG-----DGPIALVLAPTRELAQQIQQVAADFGH 679
A+TGSGKTLAY+ P +VH + R G P A ++ P RELA QI + A H
Sbjct: 422 AQTGSGKTLAYLAP-LVHRLREDEERHGILARLKRPRACIVVPARELATQILKTAKSLCH 480
Query: 680 TSYVRNTCVFGGAPKREQARDLE 748
+ R+ + GG ++ DLE
Sbjct: 481 HARFRSVGLIGGRKQKWMRDDLE 503
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 48.8 bits (111), Expect = 5e-06
Identities = 31/79 (39%), Positives = 40/79 (50%)
Frame = +2
Query: 509 GVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 688
G AKTGSGKT A+ LP + + + P G A+VL PTRELA QI G
Sbjct: 49 GCAKTGSGKTAAFALPILQKLCDDPY-----GIFAVVLTPTRELAFQIADQFKVLGRPIG 103
Query: 689 VRNTCVFGGAPKREQARDL 745
++ + GG +QA L
Sbjct: 104 LKEAVIVGGLDMMKQALSL 122
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 48.0 bits (109), Expect = 8e-06
Identities = 25/73 (34%), Positives = 42/73 (57%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
K+ +A+TGSGKT A+++P + G AL+L+PTRELA Q Q+ + G
Sbjct: 319 KDVVAMARTGSGKTAAFLIPMFEKLQTHTA---KVGIRALILSPTRELALQTQKFIKELG 375
Query: 677 HTSYVRNTCVFGG 715
+ ++++ + GG
Sbjct: 376 RFTGLKSSVILGG 388
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 47.2 bits (107), Expect = 1e-05
Identities = 30/80 (37%), Positives = 41/80 (51%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
K+ G+A+TGSGKT A+ LP + + + P AL+L PTRELA QI + G
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQALLDNP-----QRLFALILTPTRELAFQISEQCEALG 56
Query: 677 HTSYVRNTCVFGGAPKREQA 736
V+ + GG QA
Sbjct: 57 SGIGVKCAVIVGGIDMMSQA 76
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 46.0 bits (104), Expect = 3e-05
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Frame = +2
Query: 434 DNGLQRTDAHSSSRLADSYVW-KEFSGVAKTGSGKTLAYILPAIVHIN-------NQPPI 589
D G + S + + ++ ++ G A+TGSGKTLA+ +P I HI Q P
Sbjct: 147 DQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPIIQHIEAYKKRKAEQSPS 206
Query: 590 -------RRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGG--APKREQ 733
+G +AL++APTRELA Q++ + V+ + GG APK+++
Sbjct: 207 DKESDLESQGYPLLALIMAPTRELALQVKDHLVKAAKYTSVKVAAIVGGMAAPKQQR 263
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 45.2 bits (102), Expect = 6e-05
Identities = 30/78 (38%), Positives = 42/78 (53%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
A++G+GKT + + + I+ Q +R P ALVL+PTRELA QIQ+V G V+
Sbjct: 41 AQSGTGKTATFSISVLQAIDTQ--LRE---PQALVLSPTRELANQIQKVVLALGDYMSVQ 95
Query: 695 NTCVFGGAPKREQARDLE 748
GG E R L+
Sbjct: 96 CHACIGGTNIGEDIRKLD 113
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 44.8 bits (101), Expect = 8e-05
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +3
Query: 318 EVEEYRNKHEVTVSIVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 485
++ +R++ + V +V +P++ F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
Query: 486 AMSG 497
G
Sbjct: 197 MAHG 200
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 545 YILPAIVHINNQPPIRRG---DGPIALVLAPTRELAQQI 652
Y P + + P + G G A+V++PTRELAQQI
Sbjct: 183 YTTPTPIQMQATPLMAHGPKKSGFRAVVVSPTRELAQQI 221
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 42.3 bits (95), Expect = 4e-04
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Frame = +3
Query: 339 KHEVTVSIVEVHNPIQY---FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
K++ +V +NP+++ FEEAN + V+ YK+PTP+Q PI ++G++++
Sbjct: 116 KYDQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVM 175
Query: 510 A 512
A
Sbjct: 176 A 176
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
AK G+GKT AY++P + + + ALVL PTRELA Q Q+ + G
Sbjct: 91 AKNGTGKTAAYLVPLLERTDTTKNCIQ-----ALVLVPTRELALQTSQICIELG 139
Score = 32.7 bits (71), Expect = 0.33
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +3
Query: 390 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PKRVPAK 536
FE+ + G+ G+ +P+PIQ + P+A++G++++A K K
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
AK G+GKT AY++P + + + ALVL PTRELA Q Q+ + G
Sbjct: 91 AKNGTGKTAAYLVPLLERTDTTKNCIQ-----ALVLVPTRELALQTSQICIELG 139
Score = 32.7 bits (71), Expect = 0.33
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +3
Query: 390 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PKRVPAK 536
FE+ + G+ G+ +P+PIQ + P+A++G++++A K K
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 39.1 bits (87), Expect = 0.004
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRR---GDGPIALVLAPTRELAQQIQQVAA 667
++ +GVA GSGK LAY+LP I I + +GP+ L+L + ++ V
Sbjct: 225 RDVAGVAIEGSGKRLAYLLPIIHQITESSVYQELPLANGPLVLILCTNWQNTARVYGVCE 284
Query: 668 D-FGHTSYVRNTCVFGGAPKREQ 733
D + R +FGG + ++
Sbjct: 285 DLIRNRRRTRVQMIFGGGAEEDR 307
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 38.3 bits (85), Expect = 0.007
Identities = 22/48 (45%), Positives = 26/48 (54%)
Frame = +2
Query: 605 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 748
P ALVL+PTRELA QIQ+V G V+ GG E R L+
Sbjct: 4 PQALVLSPTRELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLD 51
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 36.3 bits (80), Expect = 0.027
Identities = 21/61 (34%), Positives = 34/61 (55%)
Frame = +2
Query: 467 SSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 646
+S + + + K+ A TG+GKT A++LP + + +P + LV+ PTRELA
Sbjct: 38 ASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLYRP--TQSPAIRVLVITPTRELAI 95
Query: 647 Q 649
Q
Sbjct: 96 Q 96
Score = 32.7 bits (71), Expect = 0.33
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 423 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 512
+ V +G+ PTPIQA P+A+ GK++ A
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKDVCA 52
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 35.1 bits (77), Expect = 0.062
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSYV 691
+++G+GKT A++L + ++ P P + L+PT ELA+Q +VA G H ++
Sbjct: 149 SQSGTGKTAAFVLTMLSRVDATKPY-----PQVICLSPTYELARQTGKVAEAMGKHCPHI 203
Query: 692 R-NTCVFGGA-PKREQARD 742
+ N V G P+ ++ D
Sbjct: 204 KINYAVRGNQFPRGQKCTD 222
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +3
Query: 339 KHEVTVSIVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 494
KHEV V + +P+ + FEE +++GV MG+ +P+ IQ P+ ++
Sbjct: 85 KHEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLA 139
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 34.3 bits (75), Expect = 0.11
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA-QQIQQVAADFGHTSYV 691
++TG+GK+L ++LP++ Q P RG G I ++ PTRELA Q + +V+ G S V
Sbjct: 204 SETGTGKSLVFLLPSV-----QDP-GRGYGTI--IVVPTRELASQMLYEVSRLLGDKSIV 255
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 33.9 bits (74), Expect = 0.14
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 381 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 512
I FE+ + + + V GYK+PTP+Q PI ++L+A
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMA 917
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPP 586
++ A+TGSGKT A+++P + I + P
Sbjct: 913 RDLMACAQTGSGKTAAFLIPILSRIYMEGP 942
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 32.7 bits (71), Expect = 0.33
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPIA-LVLAPTRELAQQIQQVAADF-GHTSY 688
AK+G GKT ++L + + P+ DG ++ LV+ TRELA QI + F + S
Sbjct: 91 AKSGMGKTAVFVLATLQQLE---PV---DGQVSVLVMCHTRELAFQIHKEYERFCKYMSN 144
Query: 689 VRNTCVFGGAPKREQARDLE 748
++ FGG ++ + L+
Sbjct: 145 IKIAVFFGGINIKKDQQTLK 164
>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 32.7 bits (71), Expect = 0.33
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPIA-LVLAPTRELAQQIQQVAADF-GHTSY 688
AK+G GKT ++L + + P+ DG ++ LV+ TRELA QI + F + S
Sbjct: 91 AKSGMGKTAVFVLATLQQLE---PV---DGQVSVLVMCHTRELAFQIHKEYERFCKYMSN 144
Query: 689 VRNTCVFGGAPKREQARDLE 748
++ FGG ++ + L+
Sbjct: 145 IKIAVFFGGINIKKDQQTLK 164
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 31.5 bits (68), Expect = 0.76
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSYV 691
AK+G+GKT + + A+ ++ I + ++L PTRE+A Q++ V G H +
Sbjct: 57 AKSGTGKTCVFSVIALENV-----ITESNCIQIIILTPTREIAVQVKDVICAIGCHYDGL 111
Query: 692 RNTCVFGGAPKREQARDLE 748
GG E + L+
Sbjct: 112 ACKVFIGGISLEEDKKALK 130
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +3
Query: 366 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 479
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 312 PYEVEEYRNKHEVTVSIVEVHNPIQYFEEANFPDYVQQGVKTMG 443
P+E + + KH++ V+ VE + +Q +E F + ++Q VK G
Sbjct: 252 PFEPPKPKTKHKLDVATVEDYKKLQEYEREKFTEMIKQ-VKDTG 294
>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
Length = 401
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -2
Query: 262 GWRKQNPNLGVACS--ALQRILFSHQSLQILQIYCHRCQTETNYRRICCLLQIWN-HRFH 92
GWR + S AL+RI + ++ C +YRR CC L +W H +
Sbjct: 181 GWRVTLRVIAATTSQQALERIATPVTTSKLRCSTTQECCVRVDYRRKCC-LHVWRVHTTN 239
Query: 91 GYYSS 77
Y+SS
Sbjct: 240 TYWSS 244
>SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 196 HQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGY 86
H L YC RC T CCLLQ++++ ++G+
Sbjct: 484 HLQQPSLAAYC-RCITILTTAIACCLLQVYHNTYNGH 519
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 324 EEYRNKHEVTVSIVEVHNPIQYFEEANFPDY 416
EE NK + + +HNP YFE+ + DY
Sbjct: 234 EEVNNKLHKILIVNMIHNPFNYFEKKSPTDY 264
>SB_42908| Best HMM Match : NADH_dehy_S2_C (HMM E-Value=3.5)
Length = 218
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -1
Query: 566 AQLLARCRP--TFCRNPFWLRH*ILSRHSYRPALSL 465
A LLA RP T R+ +W R+ +H Y PAL L
Sbjct: 93 ALLLAPLRPVTTIIRHYYWHRYAQCKQHQYHPALLL 128
>SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)
Length = 373
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +3
Query: 309 SPYEVEEYRNKHEVTVSIVEVHNPIQYFEEANFPDYV-QQGVKTMGYKEPTPIQAQGWPI 485
+PY +++ N + T S+ E H +Q E + P + + + +KEP P+ + G P+
Sbjct: 176 TPYVIDQRPNTYTFTKSLAE-HVLLQ--EASGLPVSIFRPSIIGASFKEPLPVPSDGIPV 232
Query: 486 AMSGKNLV 509
G ++
Sbjct: 233 YNCGTGVL 240
>SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1498
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/66 (21%), Positives = 32/66 (48%)
Frame = -1
Query: 446 VTHCLYTLLHIIRKICFFKVLNRIMNLNDTYSYLVFISILFDFIW*SFENCRMWIIKVFV 267
+ + + LL + +++ ++ L R L D ++YL + +LF R+ + K +
Sbjct: 1063 IMYLAFLLLFLYKQVKKYRALGRKEYLKDLWNYLEILVLLFSLSAIGLYFARLALTKYTI 1122
Query: 266 ERLEET 249
++ET
Sbjct: 1123 GNMKET 1128
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,361,795
Number of Sequences: 59808
Number of extensions: 507305
Number of successful extensions: 1311
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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