Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021232
         (752 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    52   2e-08
AY534996-1|AAT07394.1|  471|Anopheles gambiae XK-related b protein.    25   2.5  
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    25   2.5  
AJ302655-1|CAC35520.1|  332|Anopheles gambiae gSG5 protein protein.    24   5.8  
AY341161-1|AAR13725.1|  159|Anopheles gambiae CED6 protein.            23   7.7  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 52.0 bits (119), Expect = 2e-08
 Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
 Frame = +2

Query: 497 KEFSGVAKTGSGKTLAYILPAIVHI-NNQPPIR-RGDGPIALVLAPTRELAQQIQQVAAD 670
           ++    A+TGSGKT A++LP I H+ + +  +  R   P  +++APTRELA QI      
Sbjct: 212 RDLMACAQTGSGKTAAFMLPMIHHLLDKEDSLELRTRNPYIVIVAPTRELAIQIHDEGRK 271

Query: 671 FGHTSYVRNTCVFGGAPKREQ 733
           F H + ++    +GG   + Q
Sbjct: 272 FAHGTKLKVCVSYGGTAVQHQ 292



 Score = 37.5 bits (83), Expect = 4e-04
 Identities = 18/56 (32%), Positives = 31/56 (55%)
 Frame = +3

Query: 345 EVTVSIVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 512
           +V VS     + ++ FE +   + V   V+   Y +PTPIQ    PI ++G++L+A
Sbjct: 161 QVRVSGENPPDHVESFERSGLREEVMTNVRKSSYTKPTPIQRYAIPIILNGRDLMA 216


>AY534996-1|AAT07394.1|  471|Anopheles gambiae XK-related b protein.
          Length = 471

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -3

Query: 147 RRIIAEFVASSKFGTTVSTAIIPVTRHDYFSDLVEDVYLNYGFFLTQ 7
           RR+ A+  A ++F          ++   YF D+V DV L Y  +  Q
Sbjct: 59  RRVRAKSKAMTEFLPLCDVLFNVISLAGYFCDVVFDVVLGYALYERQ 105


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
 Frame = -2

Query: 220 ALQRILFSHQSLQILQ------IYCHRCQTETNYRRIC 125
           A +R+  SHQS  IL+      I CHRC+   + +R C
Sbjct: 180 AQKRMEKSHQSESILRVGPEKKITCHRCRKPGHMKRDC 217


>AJ302655-1|CAC35520.1|  332|Anopheles gambiae gSG5 protein protein.
          Length = 332

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +1

Query: 220 QNMRRPDWDSVSSNLSTKTFMIHILQFSKDHHMKSKSIEINTR 348
           QN+ RP+   +   L+T  F +++ Q  +  H++   + I +R
Sbjct: 94  QNISRPNLGELFQKLTTGFFSLNLFQIGQ--HVRGVLVSIKSR 134


>AY341161-1|AAR13725.1|  159|Anopheles gambiae CED6 protein.
          Length = 159

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 461 HSSSRLADSY-VWKEFSGVAKTGSGKT 538
           H  S  AD   V K FS +AKTG+G T
Sbjct: 69  HKISYCADEKGVKKFFSFIAKTGTGAT 95


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 784,129
Number of Sequences: 2352
Number of extensions: 16165
Number of successful extensions: 41
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 77755161
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)