Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021232
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       51   1e-08
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.4  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   9.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   9.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.4  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   9.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 51.2 bits (117), Expect = 1e-08
 Identities = 24/56 (42%), Positives = 34/56 (60%)
 Frame = +3

Query: 345 EVTVSIVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 512
           +V VS   V  PI+ FE A   + V   +K  GYK+PTP+Q    PI M+G++L+A
Sbjct: 183 QVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMA 238



 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
 Frame = +2

Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPP----IRRGDGPIALVLAPTRELAQQIQQVA 664
           ++    A+TGSGKT A+ +P I  +  +            P  ++++PTREL  QI Q  
Sbjct: 234 RDLMACAQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQI 293

Query: 665 ADFGHTSYVRNTCVFGGAPKREQ 733
             F   S ++    +GG     Q
Sbjct: 294 VKFSLNSILKTVVAYGGTSVMHQ 316


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 364 TILTVTSCLFLYSSTSYGDLLRTV 293
           TILT  S +F Y ST+   LL  +
Sbjct: 327 TILTYMSGVFYYLSTTVNPLLYNI 350


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 259 WRKQNPNLGV 230
           W+KQNP L V
Sbjct: 63  WKKQNPGLDV 72


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -3

Query: 243 PIWASHVLPSREFFFP 196
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 625 RQDQSNRTITSPNRRLVIYVHNCW 554
           +Q QS +TIT     +VI    CW
Sbjct: 250 KQVQSRKTITRMLSAVVITFFICW 273


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 77  TGIIAVETVVPNLEEATNSA 136
           T + A   V P +EE TN+A
Sbjct: 412 TALGAAALVAPGMEEPTNTA 431


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -3

Query: 243 PIWASHVLPSREFFFP 196
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -1

Query: 743 SPGLALF*EHHQTHTCYEHKMCVQNLQQ 660
           SP L     HHQ HT + H    Q   Q
Sbjct: 160 SPPLVESQMHHQMHTQHPHMQPQQGQHQ 187


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +3

Query: 303 KRSPYEVEEYRNKHEVTV 356
           K  P++V+++R+K  VT+
Sbjct: 64  KNYPFDVDQWRDKTFVTI 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,731
Number of Sequences: 438
Number of extensions: 4741
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)