Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021232
(752 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 120 1e-27
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 113 1e-25
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 113 1e-25
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 90 1e-18
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 90 1e-18
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 90 1e-18
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 90 2e-18
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 88 5e-18
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 87 1e-17
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 87 2e-17
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 82 3e-16
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 75 7e-14
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 69 3e-12
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 66 2e-11
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 65 4e-11
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 64 1e-10
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 64 1e-10
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 61 9e-10
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 60 2e-09
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 60 2e-09
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 58 8e-09
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 55 6e-08
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 54 1e-07
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 53 2e-07
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 52 4e-07
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 52 5e-07
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 51 7e-07
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 51 9e-07
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 50 2e-06
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 50 2e-06
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 50 2e-06
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 48 5e-06
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 47 1e-05
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 47 1e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 47 1e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 46 2e-05
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 46 3e-05
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 45 6e-05
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 44 8e-05
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 44 8e-05
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 44 1e-04
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 43 2e-04
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 43 3e-04
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 42 6e-04
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 42 6e-04
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 42 6e-04
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 41 8e-04
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 41 8e-04
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 41 0.001
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 40 0.001
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 39 0.003
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 39 0.004
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 38 0.005
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 38 0.005
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 38 0.007
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 37 0.012
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 36 0.029
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 35 0.067
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 34 0.088
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 33 0.20
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 32 0.47
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 32 0.47
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 32 0.47
At2g25460.1 68415.m03049 expressed protein 30 1.4
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 30 1.4
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 30 1.9
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 30 1.9
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 5.8
At4g20240.1 68417.m02957 cytochrome P450, putative similar to |C... 28 7.7
At1g76120.1 68414.m08839 tRNA pseudouridine synthase family prot... 28 7.7
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 120 bits (288), Expect = 1e-27
Identities = 52/85 (61%), Positives = 68/85 (80%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ G+A+TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA QIQQ A+ FG
Sbjct: 137 RDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFG 196
Query: 677 HTSYVRNTCVFGGAPKREQARDLER 751
+S ++ TC++GG PK Q RDL++
Sbjct: 197 SSSKIKTTCIYGGVPKGPQVRDLQK 221
Score = 97.9 bits (233), Expect = 6e-21
Identities = 42/85 (49%), Positives = 56/85 (65%)
Frame = +3
Query: 255 LQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSIVEVHNPIQYFEEANFPDYVQQGVK 434
L PF KNFY P V + EVEEYR E+TV ++ P++ F + FPDYV + VK
Sbjct: 56 LTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVK 115
Query: 435 TMGYKEPTPIQAQGWPIAMSGKNLV 509
G+ EPTPIQ+QGWP+AM G++L+
Sbjct: 116 KAGFTEPTPIQSQGWPMAMKGRDLI 140
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 113 bits (272), Expect = 1e-25
Identities = 51/85 (60%), Positives = 67/85 (78%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ G+A+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG
Sbjct: 203 RDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFG 262
Query: 677 HTSYVRNTCVFGGAPKREQARDLER 751
S VR+TC++GGAPK Q RDL R
Sbjct: 263 LRSGVRSTCIYGGAPKGPQIRDLRR 287
Score = 90.2 bits (214), Expect = 1e-18
Identities = 38/92 (41%), Positives = 60/92 (65%)
Frame = +3
Query: 234 PRLGFCFLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSIVEVHNPIQYFEEANFPD 413
P+ F L F KNFY PTV + +V YR + +++V +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 414 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
+ + + +G+ EPTPIQAQGWP+A+ G++L+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLI 206
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 113 bits (272), Expect = 1e-25
Identities = 51/85 (60%), Positives = 67/85 (78%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ G+A+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG
Sbjct: 203 RDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFG 262
Query: 677 HTSYVRNTCVFGGAPKREQARDLER 751
S VR+TC++GGAPK Q RDL R
Sbjct: 263 LRSGVRSTCIYGGAPKGPQIRDLRR 287
Score = 90.2 bits (214), Expect = 1e-18
Identities = 38/92 (41%), Positives = 60/92 (65%)
Frame = +3
Query: 234 PRLGFCFLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSIVEVHNPIQYFEEANFPD 413
P+ F L F KNFY PTV + +V YR + +++V +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 414 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
+ + + +G+ EPTPIQAQGWP+A+ G++L+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLI 206
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 90.2 bits (214), Expect = 1e-18
Identities = 44/85 (51%), Positives = 57/85 (67%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ +AKTGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFG 254
Query: 677 HTSYVRNTCVFGGAPKREQARDLER 751
+S + TC++GGAPK Q RDLER
Sbjct: 255 RSSRISCTCLYGGAPKGPQLRDLER 279
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/76 (43%), Positives = 45/76 (59%)
Frame = +3
Query: 285 PHPTVLKRSPYEVEEYRNKHEVTVSIVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 464
P P+ S E Y +HE+TVS +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 465 QAQGWPIAMSGKNLVA 512
QAQ WPIAM G+++VA
Sbjct: 185 QAQSWPIAMQGRDIVA 200
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 90.2 bits (214), Expect = 1e-18
Identities = 44/85 (51%), Positives = 57/85 (67%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ +AKTGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFG 254
Query: 677 HTSYVRNTCVFGGAPKREQARDLER 751
+S + TC++GGAPK Q RDLER
Sbjct: 255 RSSRISCTCLYGGAPKGPQLRDLER 279
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/76 (43%), Positives = 45/76 (59%)
Frame = +3
Query: 285 PHPTVLKRSPYEVEEYRNKHEVTVSIVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 464
P P+ S E Y +HE+TVS +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 465 QAQGWPIAMSGKNLVA 512
QAQ WPIAM G+++VA
Sbjct: 185 QAQSWPIAMQGRDIVA 200
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 90.2 bits (214), Expect = 1e-18
Identities = 44/85 (51%), Positives = 57/85 (67%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ +AKTGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFG 254
Query: 677 HTSYVRNTCVFGGAPKREQARDLER 751
+S + TC++GGAPK Q RDLER
Sbjct: 255 RSSRISCTCLYGGAPKGPQLRDLER 279
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/76 (43%), Positives = 45/76 (59%)
Frame = +3
Query: 285 PHPTVLKRSPYEVEEYRNKHEVTVSIVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 464
P P+ S E Y +HE+TVS +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 465 QAQGWPIAMSGKNLVA 512
QAQ WPIAM G+++VA
Sbjct: 185 QAQSWPIAMQGRDIVA 200
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 89.8 bits (213), Expect = 2e-18
Identities = 42/81 (51%), Positives = 54/81 (66%)
Frame = +2
Query: 509 GVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 688
GVAKTGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F
Sbjct: 571 GVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLG 630
Query: 689 VRNTCVFGGAPKREQARDLER 751
+R V+GG+ +Q +L+R
Sbjct: 631 IRCVPVYGGSGVAQQISELKR 651
Score = 60.1 bits (139), Expect = 2e-09
Identities = 27/84 (32%), Positives = 46/84 (54%)
Frame = +3
Query: 258 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSIVEVHNPIQYFEEANFPDYVQQGVKT 437
+PF KNFY + + + EV YR + E+ V +V PI+++ + + +K
Sbjct: 487 EPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKK 546
Query: 438 MGYKEPTPIQAQGWPIAMSGKNLV 509
+ Y++P PIQ Q PI MSG++ +
Sbjct: 547 LNYEKPMPIQTQALPIIMSGRDCI 570
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 88.2 bits (209), Expect = 5e-18
Identities = 41/84 (48%), Positives = 58/84 (69%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ G+AKTGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI A F
Sbjct: 266 RDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFS 325
Query: 677 HTSYVRNTCVFGGAPKREQARDLE 748
+R + V+GG K EQ ++L+
Sbjct: 326 KAYGLRVSAVYGGMSKHEQFKELK 349
Score = 68.9 bits (161), Expect = 3e-12
Identities = 27/84 (32%), Positives = 49/84 (58%)
Frame = +3
Query: 258 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSIVEVHNPIQYFEEANFPDYVQQGVKT 437
+P NK+FY+ ++ + E +YR + + VS +VH P++ FE+ F + +K
Sbjct: 186 EPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKK 245
Query: 438 MGYKEPTPIQAQGWPIAMSGKNLV 509
Y++PT IQ Q PI +SG++++
Sbjct: 246 QAYEKPTAIQCQALPIVLSGRDVI 269
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 87.0 bits (206), Expect = 1e-17
Identities = 42/85 (49%), Positives = 58/85 (68%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ +AKTGSGKTL Y++PA + + + R +GP L+LAPTRELA QIQ A FG
Sbjct: 473 RDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFG 531
Query: 677 HTSYVRNTCVFGGAPKREQARDLER 751
+S + TC++GGAPK Q ++LER
Sbjct: 532 RSSRISCTCLYGGAPKGPQLKELER 556
Score = 62.5 bits (145), Expect = 3e-10
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Frame = +3
Query: 267 NKNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSIVEVHNPIQYFEEANFPDYVQQGVK 434
NK+ PH P V SP E+ YR +HEVT + + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 435 TMGYKEPTPIQAQGWPIAMSGKNLVA 512
+ G+ PTPIQAQ WPIA+ +++VA
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVA 477
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 86.6 bits (205), Expect = 2e-17
Identities = 41/81 (50%), Positives = 53/81 (65%)
Frame = +2
Query: 509 GVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 688
GVAKTGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F
Sbjct: 438 GVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALG 497
Query: 689 VRNTCVFGGAPKREQARDLER 751
+ V+GG+ +Q +L+R
Sbjct: 498 IICVPVYGGSGVAQQISELKR 518
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/84 (33%), Positives = 46/84 (54%)
Frame = +3
Query: 258 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSIVEVHNPIQYFEEANFPDYVQQGVKT 437
+PF KNFY + + + V YR + E+ V +V PIQ++ + + +K
Sbjct: 354 EPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKK 413
Query: 438 MGYKEPTPIQAQGWPIAMSGKNLV 509
+ Y++P PIQAQ PI MSG++ +
Sbjct: 414 LNYEKPMPIQAQALPIIMSGRDCI 437
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 82.2 bits (194), Expect = 3e-16
Identities = 40/85 (47%), Positives = 55/85 (64%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
++ +AKTGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ A FG
Sbjct: 267 RDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQVEALKFG 325
Query: 677 HTSYVRNTCVFGGAPKREQARDLER 751
+S + C++GGAPK Q +++ER
Sbjct: 326 KSSKISCACLYGGAPKGPQLKEIER 350
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +3
Query: 429 VKTMGYKEPTPIQAQGWPIAMSGKNLVA 512
V + G+ P+PIQAQ WPIAM +++VA
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVA 271
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 324 EEYRNKHEVTVSIVEVHNPIQYFEEANFPD 413
E Y KHE+TVS +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 74.5 bits (175), Expect = 7e-14
Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAA 667
++ G+A+TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++
Sbjct: 351 RDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETV 410
Query: 668 DFGHTSYVRNTCVFGGAPKREQ 733
F H R T + GG EQ
Sbjct: 411 KFAHYLGFRVTSIVGGQSIEEQ 432
Score = 35.1 bits (77), Expect = 0.050
Identities = 13/60 (21%), Positives = 32/60 (53%)
Frame = +3
Query: 330 YRNKHEVTVSIVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
+R ++ + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 69.3 bits (162), Expect = 3e-12
Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQVA 664
++ G+AKTGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI V
Sbjct: 152 RDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVL 211
Query: 665 ADFGHTSYVRNTCVFGGAPKREQ 733
+ G +++ CV+GG+ K Q
Sbjct: 212 REAGEPCGLKSICVYGGSSKGPQ 234
Score = 37.9 bits (84), Expect = 0.007
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +3
Query: 318 EVEEYRNKHEVTVSIVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 491
E E + K VT VE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 492 SGKNLV 509
G++L+
Sbjct: 150 DGRDLI 155
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 66.1 bits (154), Expect = 2e-11
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQV 661
++ A+TGSGKT A+ P I I ++R G P+A++L+PTRELA QI
Sbjct: 197 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDE 256
Query: 662 AADFGHTSYVRNTCVFGGAPKREQARDLER 751
A F + + V+ +GG P +Q R+LER
Sbjct: 257 AKKFSYQTGVKVVVAYGGTPINQQLRELER 286
Score = 35.9 bits (79), Expect = 0.029
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Frame = +3
Query: 255 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNKHEVTVSIVEVHNPIQYFEEANFPDYVQQGV 431
+ PF + +P P ++ + + + S V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 432 KTMGYKEPTPIQAQGWPIAMSGKNLVA 512
+ Y +PTP+Q PI + G++L+A
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGRDLMA 201
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 65.3 bits (152), Expect = 4e-11
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQV 661
++ A+TGSGKT A+ P I I I R G P+A++L+PTRELA QI
Sbjct: 184 RDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDE 243
Query: 662 AADFGHTSYVRNTCVFGGAPKREQARDLER 751
A F + + V+ +GG P +Q R+LER
Sbjct: 244 ARKFSYQTGVKVVVAYGGTPVNQQIRELER 273
Score = 33.5 bits (73), Expect = 0.15
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +3
Query: 261 PF-NKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSIVEVHNPIQYFEEANFPDYVQQGVKT 437
PF N DP + + E Y + + S V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 438 MGYKEPTPIQAQGWPIAMSGKNLVA 512
Y +PTP+Q PI +G++L+A
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLMA 188
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 63.7 bits (148), Expect = 1e-10
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQV 661
++ A+TGSGKT A+ P I I + R G P A++L+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 662 AADFGHTSYVRNTCVFGGAPKREQARDLER 751
A F + + V+ +GG P +Q R+LER
Sbjct: 249 AKKFSYQTGVKVVVAYGGTPIHQQLRELER 278
Score = 32.3 bits (70), Expect = 0.36
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +3
Query: 366 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 512
+V P+ F + + D + ++ Y PTP+Q PI ++ ++L+A
Sbjct: 145 DVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 63.7 bits (148), Expect = 1e-10
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQV 661
++ A+TGSGKT A+ P I I + R G P A++L+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 662 AADFGHTSYVRNTCVFGGAPKREQARDLER 751
A F + + V+ +GG P +Q R+LER
Sbjct: 249 AKKFSYQTGVKVVVAYGGTPIHQQLRELER 278
Score = 32.3 bits (70), Expect = 0.36
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +3
Query: 366 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 512
+V P+ F + + D + ++ Y PTP+Q PI ++ ++L+A
Sbjct: 145 DVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 60.9 bits (141), Expect = 9e-10
Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 9/110 (8%)
Frame = +2
Query: 431 KDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQP---PIRRGD 601
KD G+ L ++ G+A TGSGKTL ++LP I+ + PI G+
Sbjct: 113 KDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGE 172
Query: 602 GPIALVLAPTRELAQQ----IQQVAADFGHTSY--VRNTCVFGGAPKREQ 733
GPIALV+ P+RELA+Q ++Q A Y +R+ GG R Q
Sbjct: 173 GPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQ 222
Score = 54.4 bits (125), Expect = 8e-08
Identities = 26/89 (29%), Positives = 50/89 (56%)
Frame = +3
Query: 243 GFCFLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSIVEVHNPIQYFEEANFPDYVQ 422
G + +P + ++ P V K S +++ R + +TV+ ++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 423 QGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
+ +K G PTPIQ QG P+ +SG++++
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGRDMI 138
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 60.1 bits (139), Expect = 2e-09
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 673
++ G A+TG+GKTLA+ +P I I RG P+ LVLAPTRELA+Q+++ +F
Sbjct: 142 RDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK---EF 198
Query: 674 GHTSYVRNT-CVFGGAPKREQARDLE 748
++ +T C++GG P +Q R L+
Sbjct: 199 RESAPSLDTICLYGGTPIGQQMRQLD 224
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 59.7 bits (138), Expect = 2e-09
Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Frame = +2
Query: 431 KDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINN-QPPIRRGDGP 607
K G+++ + L + ++ G A+TG+GKTLA+ +P I I RG P
Sbjct: 132 KGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNP 191
Query: 608 IALVLAPTRELAQQIQQVAADFGHTSYVRNT-CVFGGAPKREQARDL 745
LVLAPTRELA+Q+++ +F ++ +T C++GG P +Q R+L
Sbjct: 192 QCLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQMREL 235
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 57.6 bits (133), Expect = 8e-09
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 9/94 (9%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQ----IQ 655
++ G+A TGSGKTL ++LP I+ + PI G+GPI L++ P+RELA+Q ++
Sbjct: 184 RDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVE 243
Query: 656 QVAADFGHTSY--VRNTCVFGGAPKREQARDLER 751
Q A Y +R+ GG R Q ++R
Sbjct: 244 QFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKR 277
Score = 47.6 bits (108), Expect = 9e-06
Identities = 24/89 (26%), Positives = 47/89 (52%)
Frame = +3
Query: 243 GFCFLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSIVEVHNPIQYFEEANFPDYVQ 422
G + +P + P + K S + + R + + V+ ++ PI+ F++ FP V
Sbjct: 100 GITYTEPLLTG-WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVL 158
Query: 423 QGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
+K G +PTPIQ QG P+ ++G++++
Sbjct: 159 DTLKEKGIVQPTPIQVQGLPVILAGRDMI 187
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 54.8 bits (126), Expect = 6e-08
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Frame = +2
Query: 425 RCKDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRR--- 595
+ K NG++ +S + G A+TG GKTLA++LP + + N P +
Sbjct: 110 KLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKM 169
Query: 596 --GDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLER 751
G P LVL PTRELA+Q+ +G + + + C++GG Q L+R
Sbjct: 170 GYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKR 223
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 54.0 bits (124), Expect = 1e-07
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SY 688
A TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL Q+ + H +
Sbjct: 74 APTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHW 133
Query: 689 VRNTCVFGGAPK-REQAR 739
+ V GG K +E+AR
Sbjct: 134 IVPGYVMGGEKKAKEKAR 151
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +3
Query: 438 MGYKEPTPIQAQGWPIAMSGKNLV 509
MG++ PT +QAQ P+ +SG++++
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVL 71
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 53.2 bits (122), Expect = 2e-07
Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTS 685
TGSGKTLAY+LP IV + + G P +VL PTREL++Q+ +VA H +
Sbjct: 158 TGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHA 216
Query: 686 YVRNTCVFGGAPKREQARDL 745
R+ V GG+ R Q L
Sbjct: 217 RFRSILVSGGSRIRPQEDSL 236
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 52.0 bits (119), Expect = 4e-07
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Frame = +2
Query: 431 KDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAI-VHINNQPPIRRGDGP 607
K+ G Q + + K+ G A+TGSGKTLA+++PA+ + + R G G
Sbjct: 105 KEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTG- 163
Query: 608 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQAR 739
+V+ PTRELA Q + VA + + V GG +R +A+
Sbjct: 164 -VIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQ 206
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 51.6 bits (118), Expect = 5e-07
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQIQQVAADFGH 679
AKTG+GKTLA+ +P I + + RR G P LVLAPTRELA+Q+++ +
Sbjct: 146 AKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE--S 203
Query: 680 TSYVRNTCVFGGAPKREQARDLER 751
Y+ CV+GG Q L R
Sbjct: 204 APYLSTVCVYGGVSYTIQQSALTR 227
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 51.2 bits (117), Expect = 7e-07
Identities = 34/106 (32%), Positives = 53/106 (50%)
Frame = +2
Query: 428 CKDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGP 607
CK+ G+++ + + ++ G+A+TGSGKT A+ LP I+H + P G
Sbjct: 73 CKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILHRLAEDPY----GV 127
Query: 608 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDL 745
ALV+ PTRELA Q+ + G +R + + GG Q L
Sbjct: 128 FALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSL 173
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +3
Query: 390 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
FE ++ + K +G ++PTP+Q P ++G++++
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVL 99
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 50.8 bits (116), Expect = 9e-07
Identities = 27/80 (33%), Positives = 48/80 (60%)
Frame = +2
Query: 512 VAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 691
+A+TGSGKT A+++P + + P +G G AL+L+PTR+LA+Q + + G + +
Sbjct: 71 MARTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGKFTDL 127
Query: 692 RNTCVFGGAPKREQARDLER 751
R + + GG +Q +L +
Sbjct: 128 RVSLLVGGDSMEDQFEELTK 147
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +3
Query: 390 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 512
FE N V +K GYK PTPIQ + P+ +SG ++VA
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVA 70
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 50.0 bits (114), Expect = 2e-06
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +2
Query: 431 KDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGP- 607
KD G + + L K+ AKTG+GKT+A++LPAI + PP R
Sbjct: 398 KDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQP 457
Query: 608 --IALVLAPTRELAQQ 649
I LV+ PTRELA Q
Sbjct: 458 PIIVLVVCPTRELASQ 473
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAA 667
K A TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A
Sbjct: 148 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAK 207
Query: 668 DFGHTSYVRNTCVFGGAPKREQ 733
G + V GG P Q
Sbjct: 208 MLGKGLPFKTALVVGGDPMSGQ 229
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +3
Query: 378 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 512
P+ F P + ++T GY PTPIQ Q P A++GK+L+A
Sbjct: 108 PVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLA 152
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAA 667
K A TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A
Sbjct: 11 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAK 70
Query: 668 DFGHTSYVRNTCVFGGAPKREQ 733
G + V GG P Q
Sbjct: 71 MLGKGLPFKTALVVGGDPMSGQ 92
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 48.4 bits (110), Expect = 5e-06
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Frame = +2
Query: 431 KDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPI 610
K+ G R + + + ++ G A+TGSGKTLA+++PA V + + +G
Sbjct: 170 KEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTG 228
Query: 611 ALVLAPTRELAQQIQQVAADF--GHTSYVRNTCVFGGAPKREQARDLER 751
LV+ PTRELA Q VA + H+ V V GG ++ +A L +
Sbjct: 229 VLVICPTRELAIQSYGVAKELLKYHSQTVGK--VIGGEKRKTEAEILAK 275
Score = 31.1 bits (67), Expect = 0.82
Identities = 20/84 (23%), Positives = 37/84 (44%)
Frame = +3
Query: 258 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSIVEVHNPIQYFEEANFPDYVQQGVKT 437
+P K T K EVE+ + ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 438 MGYKEPTPIQAQGWPIAMSGKNLV 509
MG+ T IQA+ P M G++++
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVL 195
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 47.2 bits (107), Expect = 1e-05
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Frame = +2
Query: 431 KDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGD--G 604
KD G + + L K+ AKTG+GKT+A++LP+I + PP +
Sbjct: 70 KDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRP 129
Query: 605 PI-ALVLAPTRELAQQ 649
PI ALV+ PTRELA Q
Sbjct: 130 PILALVICPTRELANQ 145
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 47.2 bits (107), Expect = 1e-05
Identities = 29/102 (28%), Positives = 50/102 (49%)
Frame = +2
Query: 428 CKDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGP 607
C+ G ++ ++ + + ++ A TGSGKT A+ LP + + +P +R
Sbjct: 182 CETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRP--KRVFAT 239
Query: 608 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQ 733
L+L PTRELA QI + + + ++ + GG REQ
Sbjct: 240 RVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQ 281
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/41 (43%), Positives = 28/41 (68%)
Frame = +3
Query: 390 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 512
F E N + + +T+GYK+PTPIQA P+A++G++L A
Sbjct: 169 FMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCA 209
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 47.2 bits (107), Expect = 1e-05
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT- 682
A TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA F T
Sbjct: 60 AATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVAEPFVSTL 117
Query: 683 SYVRNTCVFGGAPKREQARDLE 748
V + + GG LE
Sbjct: 118 PNVNSVLLVGGREVEADMNTLE 139
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 652
K+ AKTGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
Score = 35.1 bits (77), Expect = 0.050
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = +3
Query: 318 EVEEYRNKHEVTVSIVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 497
EVEE RN E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 498 KNLVA 512
K++VA
Sbjct: 84 KDVVA 88
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 649
K+ AKTG+GKT+A++LP+I + PP R + I LV+ PTRELA Q
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/66 (34%), Positives = 41/66 (62%)
Frame = +2
Query: 452 TDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 631
TD S++ + + ++ G A+TGSGKTLA+++P + ++ + DG ++++PT
Sbjct: 95 TDVQSAA-IPHALCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPT 152
Query: 632 RELAQQ 649
RELA Q
Sbjct: 153 RELAAQ 158
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 44.4 bits (100), Expect = 8e-05
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Frame = +2
Query: 428 CKDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHI-----NNQPPIR 592
C+ G + + L + K+ G+A+TGSGKT A+ +P + + +++P
Sbjct: 24 CERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKG 83
Query: 593 RGDGP--IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQ 733
R P A VL+PTRELA QI + G +R + GG + +Q
Sbjct: 84 RRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQ 132
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +3
Query: 366 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVI 50
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 44.4 bits (100), Expect = 8e-05
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Frame = +2
Query: 494 WKEFSGVAKTGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQIQQVA 664
+K+ + A TGSGKTLA+++P + + PP + + ++++PTREL+ QI VA
Sbjct: 53 YKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQIYNVA 110
Query: 665 ADFGHT-SYVRNTCVFGGAPKREQARDLE 748
F T + V + + GG + + +E
Sbjct: 111 QPFVSTLANVNSVLLVGGREVKADMKIIE 139
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 664
A TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 61 AATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA 111
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Frame = +2
Query: 437 NGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHI----NNQPPIRRGDG 604
+G+ + + L++ K+ AKTG+GK++A++LPAI + N+ + +
Sbjct: 346 SGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAP 405
Query: 605 PIALVLAPTRELAQQI 652
AL+L PTRELA QI
Sbjct: 406 IFALILCPTRELASQI 421
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 42.7 bits (96), Expect = 3e-04
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Frame = +2
Query: 518 KTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQIQQVAADFGHTS 685
++GSGKTLAY++P I + Q + G P +VL PT ELA Q+ +
Sbjct: 419 QSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSG 478
Query: 686 Y-VRNTCVFGGAPKREQARDLER 751
R+ V GG +R Q +LE+
Sbjct: 479 VPFRSMVVTGGFRQRTQLENLEQ 501
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 41.5 bits (93), Expect = 6e-04
Identities = 24/99 (24%), Positives = 45/99 (45%)
Frame = +2
Query: 434 DNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 613
+ G +R + + ++ AK G+GKT A+ +P + I+ + + A
Sbjct: 148 EKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----A 202
Query: 614 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRE 730
+++ PTRELA Q QV + G ++ GG ++
Sbjct: 203 VIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKD 241
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +3
Query: 390 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PKRVPAK 536
FE+ + G+ G++ P+PIQ + PIA++G++++A K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 41.5 bits (93), Expect = 6e-04
Identities = 24/99 (24%), Positives = 45/99 (45%)
Frame = +2
Query: 434 DNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 613
+ G +R + + ++ AK G+GKT A+ +P + I+ + + A
Sbjct: 148 EKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----A 202
Query: 614 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRE 730
+++ PTRELA Q QV + G ++ GG ++
Sbjct: 203 VIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKD 241
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +3
Query: 390 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PKRVPAK 536
FE+ + G+ G++ P+PIQ + PIA++G++++A K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 41.5 bits (93), Expect = 6e-04
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Frame = +2
Query: 437 NGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHI----NNQPPIRRGDG 604
+G+ + + L++ K+ AKTG+GK++A++LPAI + N+ + +
Sbjct: 393 SGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAP 452
Query: 605 PIALVLAPTRELAQQI 652
L+L PTRELA QI
Sbjct: 453 IFVLILCPTRELASQI 468
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 41.1 bits (92), Expect = 8e-04
Identities = 23/46 (50%), Positives = 27/46 (58%)
Frame = +2
Query: 611 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 748
ALVLAPTRELAQQI++V G V+ GG RE R L+
Sbjct: 112 ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQ 157
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 41.1 bits (92), Expect = 8e-04
Identities = 23/46 (50%), Positives = 27/46 (58%)
Frame = +2
Query: 611 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 748
ALVLAPTRELAQQI++V G V+ GG RE R L+
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQ 155
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Frame = +3
Query: 333 RNKHEVTVSIVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 500
R ++ + VS + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 501 NLVA*PKRVPAKRWPTSCQQL 563
A K + C L
Sbjct: 180 ECFACAPTGSGKTFAFICPML 200
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 649
+E A TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 179 RECFACAPTGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/46 (50%), Positives = 27/46 (58%)
Frame = +2
Query: 611 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 748
ALVLAPTRELAQQI++V G V+ GG RE R L+
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQ 155
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 39.1 bits (87), Expect = 0.003
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 15/103 (14%)
Frame = +2
Query: 485 SYVWKEFSGVAKTGSGKTLAYILPAIVHI--------------NNQPPIRRGDGPI-ALV 619
+Y K+ G A+TGSGKTLA+ LP + + + DG + AL+
Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALI 284
Query: 620 LAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 748
+ PTRELA Q+ + + V+ + GG +Q R L+
Sbjct: 285 ITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLK 327
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/47 (51%), Positives = 31/47 (65%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 661
TGSGKTL+Y LP IV + P+R ALV+ PTR+LA Q++ V
Sbjct: 71 TGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQVKDV 113
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/79 (30%), Positives = 38/79 (48%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
AK G+GKT A+ +P + I+ + + A++L PTRELA Q QV + ++
Sbjct: 168 AKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNIQ 222
Query: 695 NTCVFGGAPKREQARDLER 751
GG R+ L +
Sbjct: 223 VMVTTGGTSLRDDIMRLHQ 241
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +3
Query: 390 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PKRVPAK 536
FE+ + +G+ G+++P+PIQ + PIA++G +++A K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/79 (30%), Positives = 38/79 (48%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
AK G+GKT A+ +P + I+ + + A++L PTRELA Q QV + ++
Sbjct: 168 AKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNIQ 222
Query: 695 NTCVFGGAPKREQARDLER 751
GG R+ L +
Sbjct: 223 VMVTTGGTSLRDDIMRLHQ 241
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +3
Query: 390 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PKRVPAK 536
FE+ + +G+ G+++P+PIQ + PIA++G +++A K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 37.9 bits (84), Expect = 0.007
Identities = 23/72 (31%), Positives = 36/72 (50%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 694
AK G+GKT A+ +P + I+ + + + A++L PTRELA Q QV + +
Sbjct: 198 AKNGTGKTGAFCIPTLEKIDPENNVIQ-----AVILVPTRELALQTSQVCKELSKYLKIE 252
Query: 695 NTCVFGGAPKRE 730
GG R+
Sbjct: 253 VMVTTGGTSLRD 264
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +3
Query: 390 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA*PKRVPAK 536
FE+ + +G+ G+++P+PIQ + PIA++G +++A K K
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 204
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 37.1 bits (82), Expect = 0.012
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 664
A+TGSGKTL Y+L IN Q A+++ PTREL Q+ +VA
Sbjct: 120 AQTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQVTKVA 164
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 35.9 bits (79), Expect = 0.029
Identities = 22/60 (36%), Positives = 30/60 (50%)
Frame = +2
Query: 497 KEFSGVAKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 676
K A GSGKT ++L + ++ P +R P AL + PTRELA Q +V G
Sbjct: 132 KHLIAQAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 34.7 bits (76), Expect = 0.067
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 378 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 512
PI+ F++ D V +GV GYK+P+ IQ + + G++++A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIA 64
Score = 34.7 bits (76), Expect = 0.067
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Frame = +2
Query: 515 AKTGSGKT--LAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTS 685
A++G+GKT +A + IV+I+++ LVL+P+RELA Q ++ G HT+
Sbjct: 66 AQSGTGKTSMIAISVCQIVNISSRKVQ-------VLVLSPSRELASQTEKTIQAIGAHTN 118
Query: 686 YVRNTCVFGGAPKREQARDLER 751
+ C+ GG E + LER
Sbjct: 119 IQAHACI-GGKSIGEDIKKLER 139
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 34.3 bits (75), Expect = 0.088
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Frame = +2
Query: 521 TGSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQQI-QQVAADF 673
TGSGKTLAY+LP + I R A+++AP+REL QI ++V
Sbjct: 156 TGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLL 215
Query: 674 GHTSYVRNTCVFGGAPKREQARDLER 751
G + GGA + Q L++
Sbjct: 216 GPVHRRMVQQLVGGANRMRQEEALKK 241
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 390 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 509
FEE PD + ++ G+ PT +Q+ P + G + V
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAV 151
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 33.1 bits (72), Expect = 0.20
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 611 ALVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKREQARDLE 748
AL+L+PTRELA Q ++ G H + + C+ GG E R LE
Sbjct: 106 ALILSPTRELATQTEKTIQAIGLHANIQAHACI-GGNSVGEDIRKLE 151
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 31.9 bits (69), Expect = 0.47
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 652
AK+G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 90 AKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 31.9 bits (69), Expect = 0.47
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 652
AK+G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 7 AKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 31.9 bits (69), Expect = 0.47
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 515 AKTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 652
AK+G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 90 AKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -2
Query: 199 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 83
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 30.3 bits (65), Expect = 1.4
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Frame = +2
Query: 431 KDNGLQRTDAHSSSRLADSYVWKEFSGVAKTGSGKTLAYILPAIVHINN----QPPIRRG 598
+D+G R + + K+ A+TGSGKT Y+ P I + N R
Sbjct: 96 RDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNRE 155
Query: 599 DGP-----IALVLAPTRELAQQI 652
+ P I+L+L P L +Q+
Sbjct: 156 ERPFPLKNISLILCPNVMLCEQV 178
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 29.9 bits (64), Expect = 1.9
Identities = 25/91 (27%), Positives = 42/91 (46%)
Frame = +3
Query: 270 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSIVEVHNPIQYFEEANFPDYVQQGVKTMGYK 449
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+ K +G
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK-CKDVG-- 216
Query: 450 EPTPIQAQGWPIAMSGKNLVA*PKRVPAKRW 542
T + Q W +L+ + +PA RW
Sbjct: 217 -ATLVICQ-WGFDDEANHLLM-HRNLPAVRW 244
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 29.9 bits (64), Expect = 1.9
Identities = 25/91 (27%), Positives = 42/91 (46%)
Frame = +3
Query: 270 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSIVEVHNPIQYFEEANFPDYVQQGVKTMGYK 449
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+ K +G
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK-CKDVG-- 292
Query: 450 EPTPIQAQGWPIAMSGKNLVA*PKRVPAKRW 542
T + Q W +L+ + +PA RW
Sbjct: 293 -ATLVICQ-WGFDDEANHLLM-HRNLPAVRW 320
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 651 ICCANSLVGAKTKAIGPSPLRI 586
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At4g20240.1 68417.m02957 cytochrome P450, putative similar to
|C71R_ARATH Cytochrome P450 71A27 (SP:O65438)
[Arabidopsis thaliana]
Length = 865
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -1
Query: 308 SFENCRMWIIKVFVERLEETESQS 237
SFEN R IKV E+LEE S S
Sbjct: 144 SFENLREEEIKVMTEKLEEASSSS 167
>At1g76120.1 68414.m08839 tRNA pseudouridine synthase family protein
similar to SP|Q9Y606 tRNA pseudouridine synthase A (EC
4.2.1.70) (Uracil hydrolyase) {Homo sapiens}; contains
Pfam profile PF01416: tRNA pseudouridine synthase
Length = 463
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 249 CFLQPFNKNFYDPHPTV-LKRSPYEVEEYRNKH 344
CF +N+NF D H V ++ E E ++ KH
Sbjct: 375 CFFTSYNRNFEDSHEEVSMEAYKEEAEAFKLKH 407
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,278,266
Number of Sequences: 28952
Number of extensions: 354034
Number of successful extensions: 1178
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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