Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021231
(745 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha... 31 0.23
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 28 1.6
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 27 2.8
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 27 2.8
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 27 2.8
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory... 26 4.9
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 26 4.9
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi... 26 6.5
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 8.6
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 25 8.6
>SPBC14F5.12c |cbh2||centromere binding protein
Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 30.7 bits (66), Expect = 0.23
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 177 NHPQKFTSTRQVIDPVDNTNVETTCPKETKLLEPSLFRK-WL-YQLNDLRL 323
N +K +T V PV++T + C +E S +RK WL Y L ++RL
Sbjct: 300 NSERKLVNTTVVFLPVNSTEIYHPCGQEIVYAFKSYYRKYWLNYMLEEIRL 350
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 228 NTNVETTCPKETKLLEPSLFRKWLYQLNDLRLETKARHKQEPGSVTNPTDN 380
++ VET ET S FRK+ LNDLR +R+++ + T + N
Sbjct: 601 SSTVETAKQAETTASSDS-FRKYANTLNDLRHLKSSRNRKATSNETQSSSN 650
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 612 TSRPYISTESKNFATSMLHQKDELDNAKEITFKSSYSETN 731
T PY+STE K LH DN+ F ++ T+
Sbjct: 667 TDEPYVSTEGKATGFQQLHPLALSDNSSNQIFTGAWEWTS 706
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 477 YNRFDGESAFQAHTDPSLATSTLHVYM 557
Y FD AF HTDP ++ + L VY+
Sbjct: 1088 YTVFDVLPAFFCHTDPWVSLAALEVYV 1114
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 484 DLTAKAPSRRTLIRRWQHRPSMCIWPLKTNS 576
D ++K RR ++ WQ RP + ++ L T +
Sbjct: 1476 DGSSKISQRRDMVTEWQTRPELFVFLLSTRA 1506
>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 545
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 222 VDNTNVETTCPKETKLLEPSLFRK 293
V+N N+ TT PK ++ P +RK
Sbjct: 63 VNNENIITTTPKHQTVITPKSYRK 86
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 340 INKSREASPIRPITYTYQYRSENNSLL 420
IN +R ASP RP + + Q S SLL
Sbjct: 477 INSNRAASPFRPTSVSPQPSSPTKSLL 503
>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
Dld1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 642 CSLSICKGGLWSSCRGPENRLSTVCFQRPYTHGGSML 532
C + GG ++ RG + L T+C ++ T GG+ L
Sbjct: 49 CVIGGGPGGYVAAIRGAQLGLKTICVEKRGTLGGTCL 85
>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 226 TTQT*RRPAPKKPSYLNLACSVNGYTNLTTYDSKLRQDINKSREASPIRPI 378
+T T RRP ++ ++ G +L TYDS+L K R+ S + P+
Sbjct: 5 STVTKRRPFQAPNDLVHPLSNILG--SLVTYDSRLHLPQPKDRQCSTLVPL 53
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 307 LTTYDSKLRQDINKSREASPIRPIT 381
L + KL +D+N + SPI P+T
Sbjct: 170 LNFFLDKLHEDLNSNASRSPIAPLT 194
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,240,219
Number of Sequences: 5004
Number of extensions: 70542
Number of successful extensions: 202
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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