Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021231
(745 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0052 - 25433204-25434151 31 0.73
04_03_1018 + 21753634-21753640,21754282-21754315,21754413-217544... 31 0.97
01_01_0886 - 6970112-6970225,6970357-6970473,6970567-6970635,697... 31 0.97
03_06_0203 - 32337928-32338025,32338745-32338820,32338905-323389... 31 1.3
09_03_0206 + 13485420-13486439 30 1.7
04_04_0043 - 22330282-22330410,22330484-22330568,22330602-223307... 29 2.9
09_01_0013 - 355103-355435 29 3.9
08_02_1378 + 26536082-26537803 29 3.9
06_03_1499 + 30593336-30593750,30594352-30595343 29 3.9
06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306... 29 3.9
12_02_0976 + 24995576-24996904,24997011-24997157,24997428-24997781 28 6.8
11_04_0143 + 14034141-14034257,14034349-14034594,14034797-14035711 28 6.8
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 28 6.8
07_03_1069 + 23743031-23744062 28 6.8
09_04_0231 + 15875955-15876005,15876141-15876191,15877911-158779... 28 9.0
08_01_0431 + 3779519-3780393,3780402-3780768 28 9.0
>02_05_0052 - 25433204-25434151
Length = 315
Score = 31.5 bits (68), Expect = 0.73
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = -2
Query: 585 RLSTVCFQRPYTHGGSMLPATDQCAPGRRFRRQ-IGCIMRPEGGDEQFVRAD 433
R++ C RP GG D+ AP R R + C + D FVR +
Sbjct: 43 RIAASCLPRPCPEGGDDPMECDEAAPARALRMEAASCFLPDHDEDTHFVRPE 94
>04_03_1018 +
21753634-21753640,21754282-21754315,21754413-21754432,
21754485-21755782
Length = 452
Score = 31.1 bits (67), Expect = 0.97
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Frame = -3
Query: 728 RLGIARFEGDLLCIVQFVFLM-------EHRGSKVLALCRYVRAACGRHVGAQKIVFQLF 570
R+ +AR G +V+ VF+M EH + +LA+CR RAA GA + L
Sbjct: 369 RMAVARAPGGTRALVRHVFMMNSSNDGSEHAVAALLAVCRESRAARSEAAGAGVVTLLLL 428
Query: 569 V 567
+
Sbjct: 429 L 429
>01_01_0886 -
6970112-6970225,6970357-6970473,6970567-6970635,
6970711-6970849,6970964-6971532,6971799-6971966,
6972097-6972184,6972260-6972818,6972924-6973024,
6973113-6973155,6973845-6973938,6974160-6974215,
6974460-6974581,6975306-6975517
Length = 816
Score = 31.1 bits (67), Expect = 0.97
Identities = 22/85 (25%), Positives = 39/85 (45%)
Frame = +3
Query: 486 FDGESAFQAHTDPSLATSTLHVYMAAENKQLKDDFLGPDMTTTSRPYISTESKNFATSML 665
FDG + + L TS +V++ KQ ++ SR + + +F++S +
Sbjct: 63 FDGFPYYLSEQTRVLLTSAAYVHL----KQADISQYTRNLAPASRAILLSGPADFSSSQI 118
Query: 666 HQKDELDNAKEITFKSSYSETNFRK 740
H K ++ + +FK S SET K
Sbjct: 119 HSKYGGGSSTDSSFKRSISETTLEK 143
>03_06_0203 -
32337928-32338025,32338745-32338820,32338905-32338971,
32339181-32339275,32340062-32340151,32340293-32340340,
32340764-32341069
Length = 259
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 51 PAYKSGPARIYNKTT*PQPRWSPQSGPQRRPHRL 152
P S PA++ + T PQP PQ G +RR RL
Sbjct: 49 PRLVSSPAKLTDDATPPQPPPQPQPGDRRRRPRL 82
>09_03_0206 + 13485420-13486439
Length = 339
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/41 (43%), Positives = 20/41 (48%)
Frame = +1
Query: 616 AALTYRQRARTLLPRCSIRKTNWTMQRRSPSNRAIPRRISG 738
A Y R R LLPR S T WT RR P+ PR +G
Sbjct: 31 ATFMYSVRTRALLPRRSTTTTTWT-PRREPTGGG-PRHRAG 69
>04_04_0043 -
22330282-22330410,22330484-22330568,22330602-22330724,
22330839-22330879,22331081-22331137,22331530-22331583,
22331646-22331650,22332392-22332500
Length = 200
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +3
Query: 435 QREQTARPHLRAS*YNRFDGESAFQAHTDPSLATSTLH---VYMAAENKQLKDDFLGP 599
Q +QTA HL ++D + + D S T + VY+A NKQ ++LGP
Sbjct: 49 QDKQTALEHLEVR-EKQYDEKIYLDLYMDSSPKTPAVKNVMVYLATTNKQSNQNYLGP 105
>09_01_0013 - 355103-355435
Length = 110
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 102 QPRWSPQSGPQRRPHRLLG 158
+PRW PQ P+ RP R LG
Sbjct: 40 RPRWRPQRRPRWRPQRRLG 58
>08_02_1378 + 26536082-26537803
Length = 573
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 175 ETTPKSSRRLVKSSIPWTTQT*RRPAPKKPSYLNLACSVNGYTNLTTYD 321
E SR L++ + W+ T R P P + + A NG T++T D
Sbjct: 194 EVILSQSRFLLRCASKWSLTTGRFPLPLIAALVAFAAEANGVTSITVED 242
>06_03_1499 + 30593336-30593750,30594352-30595343
Length = 468
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +2
Query: 386 HISIEAKIIHSWYPCRSARTN-CSSPPSGL 472
H ++ I +SW PC A TN +PPS L
Sbjct: 332 HANVSGGIPYSWAPCSDALTNWTDAPPSTL 361
>06_02_0046 +
10928708-10928798,10929997-10930077,10930567-10930685,
10931275-10931894,10931992-10933184,10933280-10933359,
10933751-10933846,10933931-10934004,10936007-10936151,
10936323-10936487
Length = 887
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +1
Query: 28 KSSERLHIPHTRAGRLESTTKLLDPNPGGHPNQD-PRGD-HTDS*EI*ASPETTPKSSRR 201
+ RL GR LDP+PGG P+++ RG+ H + SP ++ K
Sbjct: 4 RKERRLAAKAAAGGRRVKLDLFLDPSPGGTPSKEGERGENHDQQTGVPTSPSSSDKKENP 63
Query: 202 L 204
L
Sbjct: 64 L 64
>12_02_0976 + 24995576-24996904,24997011-24997157,24997428-24997781
Length = 609
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 623 LHIDREQELCYLDAPSERRIG 685
L++ R +C +DAPS RRIG
Sbjct: 406 LYLTRPSRICIVDAPSLRRIG 426
>11_04_0143 + 14034141-14034257,14034349-14034594,14034797-14035711
Length = 425
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 40 RLHIPHTRAG-RLESTTKLLDPNPGGH 117
RLH+P RAG RLE+TT++ P H
Sbjct: 348 RLHVPSGRAGRRLEATTEIAIPGRTYH 374
>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 525 TDQCAPGRRFRRQ-IGCIMRPEGGDEQFVRADRHGYQE 415
TD C P + I +MR + G ++F++A+ GY+E
Sbjct: 3308 TDWCQPLDIVKEDTIVIVMRKQDGTQKFIKAEIRGYEE 3345
>07_03_1069 + 23743031-23744062
Length = 343
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Frame = -2
Query: 645 SCSLSIC--KGGLWSSCRGPENRLSTVCFQRPYTHGGSMLPATDQCAPGRR 499
SCS I + G WSS P + C R Y A D+C RR
Sbjct: 288 SCSAKIAWERDGKWSSVHAPCDVTRLQCESRDYVFAWRFRAAGDECNTHRR 338
>09_04_0231 +
15875955-15876005,15876141-15876191,15877911-15877976,
15878073-15878134,15878639-15878717,15878839-15878943,
15879032-15879142,15879492-15879629,15879821-15879895,
15880011-15880131,15880196-15880350,15880605-15880679,
15881124-15881327,15881396-15881536
Length = 477
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 400 FYTDMCMLSVGLVTLPGSCLCLALVSSRRSLSWYSHLR 287
FY + + G+ +PGS LVSS + +S SH+R
Sbjct: 410 FYAHRLLDATGIAVVPGSGFHPDLVSSCKKVSGTSHIR 447
>08_01_0431 + 3779519-3780393,3780402-3780768
Length = 413
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = -2
Query: 498 FRRQIGCIMRPEGGDEQFVRADRHGYQE*IIFASILICVCYRSDW*RFPAL 346
F RQ+ I++ +GG+++ V A ++ ++F C+ ++ FPAL
Sbjct: 309 FTRQLQ-ILKVDGGEQKLVEASAASLEDHVLFLGYEFSACFPAE--HFPAL 356
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,767,264
Number of Sequences: 37544
Number of extensions: 544820
Number of successful extensions: 1569
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1567
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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