Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021231
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19143| Best HMM Match : Ribosomal_S15 (HMM E-Value=4.1)             31   0.75 
SB_37508| Best HMM Match : S-antigen (HMM E-Value=4.3)                 31   0.99 
SB_32986| Best HMM Match : Ribosomal_S15 (HMM E-Value=7.2)             31   1.3  
SB_1197| Best HMM Match : DUF1580 (HMM E-Value=6)                      31   1.3  
SB_48759| Best HMM Match : Ribosomal_S15 (HMM E-Value=8.1)             30   2.3  
SB_10994| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_50214| Best HMM Match : RNA_capsid (HMM E-Value=9.8)                29   5.3  
SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)                   28   7.0  
SB_48340| Best HMM Match : PAN (HMM E-Value=0.4)                       28   7.0  
SB_17801| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_35287| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)                   28   9.2  
SB_33444| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   9.2  
SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.2  
SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   9.2  

>SB_19143| Best HMM Match : Ribosomal_S15 (HMM E-Value=4.1)
          Length = 338

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +1

Query: 298 YTNLTTYDSKLRQDINKSREASPIRPITYTYQYRSENNSLLVPVPVSANKLLVPTFGPH 474
           YT L    SK RQ   +SRE      I     +++EN +   P+P  AN++ +P    H
Sbjct: 81  YTELHHDRSKQRQGKTESREDIQFNNIMEIGLHKNENGNWEAPLPFRANEVHLPDHKKH 139


>SB_37508| Best HMM Match : S-antigen (HMM E-Value=4.3)
          Length = 1347

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 274 NLACSVNGYTNLTTYDSKLRQDINKSREASPIRPIT 381
           N+ C+++  T+L   DSK    +N   E+SP +PIT
Sbjct: 358 NIICTISSVTSLAYEDSKGNASVNMDNESSP-QPIT 392


>SB_32986| Best HMM Match : Ribosomal_S15 (HMM E-Value=7.2)
          Length = 331

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +1

Query: 298 YTNLTTYDSKLRQDINKSREASPIRPITYTYQYRSENNSLLVPVPVSANKLLVPTFGPH 474
           YT L    SK RQ   +SRE      I     +++EN +   P+P  AN++ +P    H
Sbjct: 43  YTELHHDRSKQRQGKTESREDIQFNNIMEIGLHKNENGNWEAPLPFRANEVHLPDNKKH 101


>SB_1197| Best HMM Match : DUF1580 (HMM E-Value=6)
          Length = 282

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +1

Query: 298 YTNLTTYDSKLRQDINKSREASPIRPITYTYQYRSENNSLLVPVPVSANKLLVPTFGPH 474
           YT L    SK RQ   +SRE      I     +++EN +   P+P  AN++ +P    H
Sbjct: 191 YTELHHDRSKQRQGKTESREDIQFNNIMKIGLHKNENGNWEAPLPFRANEVHLPDNKKH 249


>SB_48759| Best HMM Match : Ribosomal_S15 (HMM E-Value=8.1)
          Length = 337

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = +1

Query: 298 YTNLTTYDSKLRQDINKSREASPIRPITYTYQYRSENNSLLVPVPVSANKLLVPTFGPH 474
           YT L    SK RQ   +SRE      I     +++EN +   P+P  AN + +P    H
Sbjct: 84  YTELHHDRSKQRQGKTESREDIQFNNIMEIGLHKNENGNWEAPLPFRANDVHLPDNKKH 142


>SB_10994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 43/141 (30%), Positives = 58/141 (41%), Gaps = 4/141 (2%)
 Frame = +1

Query: 133 RGDHTDS*EI*ASPETTPKSSRRLVKSSIPWTTQT*RRPAPKKPSYLNLACSVNGYTNLT 312
           R D T +     S  T    SRR  ++  P + ++ R PAP  PS  +    V       
Sbjct: 17  RSDRTPAPPSRRSDRTPAPPSRRSDRTPAPPSRRSDRTPAP--PSRRSDQTPVP-----P 69

Query: 313 TYDSKLRQDIN---KSREASPIRPITYTYQYRSENNSLLVPVPVSANKLLVPTFGPHDTT 483
           ++ S LR D+     SR +  I   T     RS +   L PVP S    L P   P   +
Sbjct: 70  SWRSDLRSDLTPVPPSRRSDLISDRTPVPPSRSSD---LTPVPPSRRSDLAPV-PPSRRS 125

Query: 484 DLTAKAPSRRTLIRR-WQHRP 543
           DLT    SRR+ +R  W   P
Sbjct: 126 DLTPVPLSRRSDLRSDWTPAP 146


>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1530

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 690 HCPIRLSDGASR*QSSCSLSICKGGLWSSCRGP 592
           H  I  + GA R +S CS  +C GG+W+    P
Sbjct: 814 HSGIPYAHGAIR-KSECSSCLCNGGMWNCTDTP 845


>SB_50214| Best HMM Match : RNA_capsid (HMM E-Value=9.8)
          Length = 468

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +1

Query: 157 EI*ASPETTPKSSRRLVKSSIPWTTQT*RRPAPKKPSYLNLACSVNGYTNLTTYDSKLRQ 336
           E+ +    T + S    K +   T Q   RP   +  Y+ L C VN   + T  +  LR 
Sbjct: 89  ELGSRQNATDRLSEGKRKPATDDTKQETARPTANQHKYMLLKCRVNMSNSCTWTEFLLRY 148

Query: 337 DINKSREAS 363
           D+N  +  S
Sbjct: 149 DVNAIKTGS 157


>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
          Length = 1189

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 340  INKSREASPIRPITYTYQYRSENNSLLVPVPVSANKLLVPTF 465
            I++ R+      +   Y+Y    N LLVPVPV+  ++L P F
Sbjct: 1076 ISRMRDLKEPLGVELAYRY---GNKLLVPVPVNYEEMLRPKF 1114


>SB_48340| Best HMM Match : PAN (HMM E-Value=0.4)
          Length = 234

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 460 TFGPHDTTDLTAKAPSRRTLIRRWQHRPSMCIW 558
           TF PH  + LT      RT++++W      CI+
Sbjct: 18  TFVPHFQSRLTLSLSQNRTMLKQWSKGDDGCIY 50


>SB_17801| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 340 INKSREASPIRPITYTYQYRSENNSLLVPVPVSANKLLVPTF 465
           I++ R+      +   Y+Y    N LLVPVPV+  ++L P F
Sbjct: 25  ISRMRDLKEPLGVELAYRY---GNKLLVPVPVNYEEMLRPKF 63


>SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
 Frame = -2

Query: 681  IRLSDGASR*QSSCSLSICKGGLWSSCRGPENRLSTVCFQR--PYT--HGG 541
            +RLS  ++  ++S S ++     W S R PE+ ++ +C  R  PYT  HGG
Sbjct: 2236 VRLSKASN--ENSTSPTLIYSVNWRSFRAPEDIMTIMCSSRKYPYTLPHGG 2284


>SB_35287| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
 Frame = +1

Query: 223 WTTQT*RRPAPKKPSYLNLAC---SVNGYTNLTTYDSKLRQDINKSREASPIRPITYTYQ 393
           W+T+  +R  P K     LAC   SV+G TN++T    L  D   +  AS I  ++    
Sbjct: 2   WSTEMEKRTIPLKILATGLACEVKSVDGNTNISTDLVTLIDDFGINM-ASEIDVMSNNTS 60

Query: 394 YRSENNSLLVPV-PVSANKLLVPTF 465
              E N++++ V  +   K L   F
Sbjct: 61  LEVETNNIVMRVNKIDTTKQLKKAF 85


>SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)
          Length = 237

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 6/133 (4%)
 Frame = +1

Query: 46  HIPHTRAGRLESTTKLLDPNPGGHPNQDPRGDHTDS*EI*ASPETT--PKSSRRLVKSS- 216
           + P +  GR+  TT    P+P     Q P      +    ++P +T  P  S     SS 
Sbjct: 96  YTPASTVGRMPPTTSQSTPSPAPFFQQQPLVPTPVTLGGTSAPASTAAPPLSYPAPTSSP 155

Query: 217 --IPWT-TQT*RRPAPKKPSYLNLACSVNGYTNLTTYDSKLRQDINKSREASPIRPITYT 387
              P++  Q      P+ P   +   S  G   +    S L  DI      +P+ P++ +
Sbjct: 156 HAYPYSPAQVQLSTPPQTPPSPSTNASAGGTVTVMATPSPLLTDITAGATPAPVLPLSGS 215

Query: 388 YQYRSENNSLLVP 426
           +  + EN  ++ P
Sbjct: 216 FTGKGENVPIVPP 228


>SB_33444| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 399

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
 Frame = -1

Query: 427 RVPRVNYFRFYTDMCMLSVGLVTLPG-SCLCLALVSSR--RSLSWY 299
           R+PRV    F T +C+L+  L+TL G S +C+ L   R  RSL+ Y
Sbjct: 13  RIPRVESIIFGTSLCLLA--LLTLFGNSLVCIVLWRFRNLRSLTNY 56


>SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 52  PHTRAGRLESTTKLLDPNPGGHPNQDPRGDHTD 150
           P  RA  +E   +L D NP   P +D   DHT+
Sbjct: 118 PSIRARLVEIKKRLDDGNPSTAPEEDSDDDHTE 150


>SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2229

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
 Frame = +1

Query: 340  INKSREASPIRPITYTYQYRSENNSLL----VPVPVSANKLLVPTFGPHDTTDLTAKAPS 507
            ++K +     R  T+ Y+Y ++   LL    +   +  N+LLVP+  P +T      A  
Sbjct: 858  LSKDKFEFIFRDETFPYEYYTQFVRLLNRFQIACSLDENRLLVPSKLPEETPKDATSADL 917

Query: 508  RRTLIRRWQHRPSM 549
            R   ++R+   P M
Sbjct: 918  RYITVKRFHSLPFM 931


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,468,588
Number of Sequences: 59808
Number of extensions: 595392
Number of successful extensions: 2113
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2108
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)