Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021231
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64070.1 68418.m08046 phosphatidylinositol 4-kinase (PI4K) ne...    29   4.3  
At4g16563.1 68417.m02506 aspartyl protease family protein contai...    29   4.3  
At5g42400.1 68418.m05162 SET domain-containing protein (TXR7) co...    28   5.7  
At1g12470.1 68414.m01441 Pep3/Vps18/deep orange family protein c...    28   5.7  
At2g23790.1 68415.m02841 expressed protein contains Pfam domain,...    28   7.5  
At1g06710.1 68414.m00713 pentatricopeptide (PPR) repeat-containi...    28   7.5  
At1g01110.1 68414.m00014 expressed protein contains Prosite PS00...    28   7.5  
At5g16520.1 68418.m01932 expressed protein                             27   9.9  
At2g25260.1 68415.m03022 expressed protein                             27   9.9  
At1g24706.1 68414.m03104 expressed protein                             27   9.9  

>At5g64070.1 68418.m08046 phosphatidylinositol 4-kinase (PI4K)
           nearly identical to gi:4467359
          Length = 1121

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 672 SDGASR*QSSCSLSICKGGLWSSCRGPENRLST 574
           ++G SR Q  C ++    G WS    P+N +ST
Sbjct: 130 NEGISRIQEKCQIAATLMGEWSPLMRPQNEVST 162


>At4g16563.1 68417.m02506 aspartyl protease family protein contains
           Pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 499

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 507 GRRFRRQIGCIMRPEGGDEQFVR 439
           G+  +R+IGC+M   GGDE  +R
Sbjct: 436 GKEEKRKIGCLMLMNGGDESELR 458


>At5g42400.1 68418.m05162 SET domain-containing protein (TXR7)
            contains Pfam profile PF00856: SET domain
          Length = 1423

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +1

Query: 268  YLNLACSVNGYTNLTTYDSKLRQDINKSREASPIRPITYTYQYRSENNSL 417
            ++N +C  N YT + + + K +  I   R       I+Y Y++  E++ +
Sbjct: 1342 FINHSCEPNCYTKIISVEGKKKIFIYAKRHIDAGEEISYNYKFPLEDDKI 1391


>At1g12470.1 68414.m01441 Pep3/Vps18/deep orange family protein
            contains Pfam profile PF05131: Pep3/Vps18/deep orange
            family; similar to Vacuolar protein sorting 18 (hVPS18)
            (SP:Q9P253) {Homo sapiens}
          Length = 994

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
 Frame = +1

Query: 307  LTTYDSKLRQDINKSREASPIRPITYTYQYRSE-NNSLLVPVP----VSANKLLVPTFGP 471
            LT   S+ R+DIN +R   PI   T   + RSE ++++    P    +  N++ +P   P
Sbjct: 908  LTLLGSETRRDINGNRSDEPITSTTTADKLRSELDDAIASECPFCGELMINEITLPFIKP 967

Query: 472  HDT 480
             D+
Sbjct: 968  EDS 970


>At2g23790.1 68415.m02841 expressed protein contains Pfam domain,
           PF04678: Protein of unknown function, DUF607
          Length = 336

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 433 VSANKLLVPTFGPHDTTDLT--AKAPSRRTLIRRWQHRPSM 549
           +S++ L V T  P+D+TD T  A  P    + RR+ H  +M
Sbjct: 27  ISSSSLAVRTRVPNDSTDTTKIAPEPGDLAMSRRFMHNSAM 67


>At1g06710.1 68414.m00713 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 946

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 646 FLLSVDM*GRLVVVMSGPRKSSFNCLFSAAIYTWRVDVAS 527
           F ++++  GRL      P +S++NCL  A +   R+D AS
Sbjct: 175 FSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSAS 214


>At1g01110.1 68414.m00014 expressed protein contains Prosite
           PS00165: Serine/threonine dehydratases
           pyridoxal-phosphate attachment site
          Length = 364

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +1

Query: 349 SREASPIRPITYTYQYRSENNSLLVPVPVSANKLLVPTFGPHDTTD 486
           SR   P  P   ++ Y+S NN    P P  +  +L+ +  P    D
Sbjct: 172 SRGQRPSSPSRTSHHYQSRNNFSATPSPAKSRPILIRSASPRCQRD 217


>At5g16520.1 68418.m01932 expressed protein 
          Length = 608

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +3

Query: 258 ETKLLEPSLFRKWLYQLNDLRLETKARHKQEPGSVTNPTDNIHISV 395
           E  +L+ +LF +  + L+DL+L     H+  PGSV   T  +  S+
Sbjct: 309 EGNILKFNLFPRIYHHLHDLKLIQPLFHEFIPGSVYRDTTQLQASM 354


>At2g25260.1 68415.m03022 expressed protein 
          Length = 358

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +1

Query: 298 YTNLTTYDSKLRQDINKSREASPIRPITYTYQYRSENNSLLVPVPVSANKLLVPTF 465
           Y  + + D  LRQ++   R AS    ITYT +  S+    L    V+A   +  T+
Sbjct: 23  YNYIVSDDPPLRQELPGRRSASSGDDITYTVKTPSKKTKRLFHTAVTATDSVYSTW 78


>At1g24706.1 68414.m03104 expressed protein
          Length = 1781

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 566  KQTVERRFSGPRHDDHKPPLHIDREQ 643
            K+ +ERR  G RH     P H +RE+
Sbjct: 1595 KEDLERRAGGARHSQRLSPRHEEREK 1620


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,571,467
Number of Sequences: 28952
Number of extensions: 403565
Number of successful extensions: 1155
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)