Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021230
         (772 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    23   2.0  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   2.0  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    23   2.7  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.6  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    22   6.2  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   8.2  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   8.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.2  

>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 308 GIDAKNTLCEFTGDILR 358
           G+   N +CEFTGD  R
Sbjct: 292 GVMGFNEICEFTGDWTR 308


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 462 PWMSKKSSAKIGGPLSMGLPEPLNT 388
           PWM +K + +       GLP  L T
Sbjct: 116 PWMKEKKTTRKSSQQENGLPRRLRT 140


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 685 WRSCPRGRPRLT 650
           W+ CP+ RP  T
Sbjct: 731 WKECPKNRPTFT 742


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 649 CREP*QDRPVYRSGR 605
           C EP  D PV+R GR
Sbjct: 89  CPEPTCDEPVHRPGR 103


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 339 SRVTFFVHRSLKTCWAVY 392
           S + F +   L TCW +Y
Sbjct: 45  SAICFLLSTILGTCWIIY 62


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 95  DMFLGRLGVRDHL 57
           D+F+G L V++HL
Sbjct: 161 DLFIGTLTVKEHL 173


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 95  DMFLGRLGVRDHL 57
           D+F+G L V++HL
Sbjct: 161 DLFIGTLTVKEHL 173


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +2

Query: 146 CVWCKRS 166
           CVWCK+S
Sbjct: 380 CVWCKQS 386


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,087
Number of Sequences: 336
Number of extensions: 4825
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)