Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021230
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 146 1e-35
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 143 2e-34
06_03_1014 - 26902971-26903085,26903182-26903270,26904302-269043... 31 0.77
10_08_0527 - 18555231-18555882,18556334-18556463,18557073-18557175 29 3.1
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 29 3.1
10_08_0649 + 19589807-19591024 29 4.1
11_08_0092 - 28307180-28307380,28307471-28307936,28308008-283081... 29 5.4
07_03_0894 + 22362717-22363514 29 5.4
03_02_0243 - 6744164-6744415,6744518-6745135 29 5.4
02_01_0018 + 119890-120238,120331-120424,120518-121529 29 5.4
05_05_0256 - 23647736-23648947 28 7.2
06_01_0850 - 6472213-6473541,6474229-6474282,6474616-6474671,647... 28 9.5
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 146 bits (355), Expect = 1e-35
Identities = 79/116 (68%), Positives = 84/116 (72%), Gaps = 2/116 (1%)
Frame = +1
Query: 421 GSPNLGRRLLGHPGSAHQPMVTYLPRGDD*TGISAIDVMNSIARGQKIPIFSAAGLPHNE 600
G P L L GS+ P P TGIS IDVMNSIARGQKIP+FSAAGLPHNE
Sbjct: 156 GPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNE 215
Query: 601 IAAQICRQAGLVK--VPGKSVLDDHEDNFAIVFAAMGVNMETARFFKQDFEENGSM 762
IAAQICRQAGLVK GK +DNFAIVFAAMGVNMETA+FFK+DFEENGSM
Sbjct: 216 IAAQICRQAGLVKSLEKGKHAEGGEDDNFAIVFAAMGVNMETAQFFKRDFEENGSM 271
Score = 134 bits (325), Expect = 6e-32
Identities = 63/86 (73%), Positives = 70/86 (81%)
Frame = +2
Query: 254 VLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPI 433
VLEV G KAVVQVFEGTSGID K T +FTG++L+TPVS DMLGR+FNGSGKPID GPPI
Sbjct: 100 VLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 159
Query: 434 LAEDFLDIQGQPINPWSRIYPEEMIK 511
L E +LDI G INP R YPEEMI+
Sbjct: 160 LPEAYLDISGSSINPSERTYPEEMIQ 185
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/41 (65%), Positives = 33/41 (80%)
Frame = +3
Query: 132 LTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQ 254
+ Y+TVSGV GPLVILD+VK PK+ EIV ++L DGT R GQ
Sbjct: 59 MEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQ 99
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 143 bits (346), Expect = 2e-34
Identities = 77/104 (74%), Positives = 83/104 (79%), Gaps = 3/104 (2%)
Frame = +1
Query: 460 GSAHQPMVTYLPRGDD*TGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVK 639
GS+ P P TGIS IDVMNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK
Sbjct: 138 GSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVK 197
Query: 640 VPGKS--VLDDHED-NFAIVFAAMGVNMETARFFKQDFEENGSM 762
KS +L+ ED NFAIVFAAMGVNMETA+FFK+DFEENGSM
Sbjct: 198 RLEKSDNILESSEDENFAIVFAAMGVNMETAQFFKRDFEENGSM 241
Score = 124 bits (299), Expect = 8e-29
Identities = 64/95 (67%), Positives = 70/95 (73%), Gaps = 9/95 (9%)
Frame = +2
Query: 254 VLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPI 433
VLEV G KAVVQVFEGTSGID K T +FTG++L+TPVS DMLGRVFNGSGKPID GPPI
Sbjct: 60 VLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRVFNGSGKPIDNGPPI 119
Query: 434 LAEDFLDIQ---------GQPINPWSRIYPEEMIK 511
L E +LDI G INP R YPEEMI+
Sbjct: 120 LPEAYLDISDFDIGFAGAGSSINPSERTYPEEMIQ 154
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/41 (65%), Positives = 33/41 (80%)
Frame = +3
Query: 132 LTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQ 254
+ Y+TVSGV GPLVILD+VK PK+ EIV ++L DGT R GQ
Sbjct: 19 MEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQ 59
>06_03_1014 -
26902971-26903085,26903182-26903270,26904302-26904380,
26904488-26904585,26904848-26904952,26905031-26905117,
26905218-26905412,26905890-26905996,26906559-26906754,
26906865-26906966,26907100-26907171,26907404-26907505,
26907638-26907675,26907769-26907880,26907972-26908028,
26908122-26908177,26908283-26908409,26908856-26908910,
26908919-26909049
Length = 640
Score = 31.5 bits (68), Expect = 0.77
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = +2
Query: 254 VLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPI 415
++ + G A +QV+E T+G+ + + T L + +LG +F+G +P+
Sbjct: 93 IIRLEGDSATIQVYEETAGLMVNDPVLR-TRKPLSVELGPGILGNIFDGIQRPL 145
>10_08_0527 - 18555231-18555882,18556334-18556463,18557073-18557175
Length = 294
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -2
Query: 405 PEPLNTRPNMSSETGVRRMSPVNSQSVFFASIPDVPSNTWTTALEPLTSSTD 250
P P P S TG P S PD+P TWTT L+ +T++ D
Sbjct: 202 PPPPPPPPPPSDATGGEVSIPCFPFSPLPFIEPDLPELTWTTDLDDITATFD 253
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +2
Query: 254 VLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDM----LGRVFNGSGKPI 415
++ + G A +QV+E T+G+ + + + P+S ++ LG +F+G +P+
Sbjct: 55 IIRLEGDSATIQVYEETAGLMVNDPVLRTRKVMPAQPLSVELGPGILGNIFDGIQRPL 112
>10_08_0649 + 19589807-19591024
Length = 405
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = -2
Query: 729 ESGRFHVDTHSGEHNGEVVLVVVQD*LAGNLDKTGLSTD 613
++GR V+TH E +GE++LV V D L N + T + D
Sbjct: 230 DTGRRVVETHLVECDGELLLVSVHDNLERNPEDTTIFGD 268
>11_08_0092 -
28307180-28307380,28307471-28307936,28308008-28308117,
28308206-28308493,28309024-28309059
Length = 366
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 108 WRLPGHVPWSPGRERSPLPFF 46
WR+ GH+P G R P+ FF
Sbjct: 252 WRVQGHLPQRQGPRRVPIDFF 272
>07_03_0894 + 22362717-22363514
Length = 265
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 444 SSAKIGGPLSMGLPEPLNTRPNMSSETGVRRMSPVNSQSVFFASIPDV 301
SSA L+ GLP + R +++ E GVR + ++S F A P +
Sbjct: 56 SSAAKADALAAGLPRAVAVRADVADEAGVRSLFDA-AESAFGAGAPHI 102
>03_02_0243 - 6744164-6744415,6744518-6745135
Length = 289
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -1
Query: 217 CTISENLGNLTSSKMTRGPFTPDTVL*VSLG 125
C ++E++ L S +T P TPDTVL VS G
Sbjct: 23 CEVNESM--LDSVTVTHAPLTPDTVLEVSGG 51
>02_01_0018 + 119890-120238,120331-120424,120518-121529
Length = 484
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -2
Query: 327 VFFASIPDVPSNTWTTALEPLTSSTDQNEGFHLQALAVQSQRTW 196
VFF+ IPD W + L + S T G L A V RT+
Sbjct: 181 VFFSQIPDFDQVWWLSILAAVMSFTYSAVGLALGAAQVAQNRTF 224
>05_05_0256 - 23647736-23648947
Length = 403
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 620 DRPVLSRFPASQSWTTTRTTS 682
D P L PAS SWTTT +T+
Sbjct: 328 DYPGLGSAPASTSWTTTESTT 348
>06_01_0850 -
6472213-6473541,6474229-6474282,6474616-6474671,
6474824-6476012
Length = 875
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = -3
Query: 320 SRQYLMSLRTLGRRLWSR*PRV-LTRTKGSI-CKL*LYNLRELGELDFIQ 177
+R+ ++ L +L RRL R + + RTKG + CKL Y+ LGE FI+
Sbjct: 791 ARRPVLLLYSLERRLLPRYYLLKVLRTKGLLDCKLCYYSTAALGEKKFIE 840
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,276,913
Number of Sequences: 37544
Number of extensions: 581677
Number of successful extensions: 1661
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1657
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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