Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021230
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.)             138   5e-33
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.021
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)                36   0.027
SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)                33   0.34 
SB_12162| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.59 
SB_9151| Best HMM Match : WAP (HMM E-Value=0.045)                      30   1.8  
SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                 29   5.5  
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)          29   5.5  
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_11794| Best HMM Match : TNFR_c6 (HMM E-Value=1.4e-05)               28   7.3  
SB_53072| Best HMM Match : K_tetra (HMM E-Value=8.2e-31)               28   9.6  
SB_20006| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score =  138 bits (334), Expect = 5e-33
 Identities = 65/71 (91%), Positives = 68/71 (95%)
 Frame = +2

Query: 254 VLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPI 433
           VLEVSGSKAVVQVFEGTSGIDAK+T CEFTGDILRTPVSEDMLGRVFNGSGK ID+GPP+
Sbjct: 53  VLEVSGSKAVVQVFEGTSGIDAKHTTCEFTGDILRTPVSEDMLGRVFNGSGKAIDRGPPV 112

Query: 434 LAEDFLDIQGQ 466
           LAEDFLDIQ Q
Sbjct: 113 LAEDFLDIQAQ 123



 Score =   99 bits (238), Expect = 2e-21
 Identities = 48/55 (87%), Positives = 50/55 (90%)
 Frame = +1

Query: 598 EIAAQICRQAGLVKVPGKSVLDDHEDNFAIVFAAMGVNMETARFFKQDFEENGSM 762
           +I AQICRQAGLVK   K V+DDHEDNFAIVFAAMGVNMETARFFKQDFEENGSM
Sbjct: 119 DIQAQICRQAGLVKF-NKGVMDDHEDNFAIVFAAMGVNMETARFFKQDFEENGSM 172



 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 31/39 (79%), Positives = 34/39 (87%)
 Frame = +3

Query: 138 YKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQ 254
           YKTVSGVNGPLVILD VKFPKF+EIV L L DG+ RSG+
Sbjct: 14  YKTVSGVNGPLVILDNVKFPKFAEIVTLTLQDGSQRSGE 52


>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 36.7 bits (81), Expect = 0.021
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +2

Query: 284 VQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPID-KGP 427
           V VF G   +  +  + + TG I+  PV E++LGRV +  G PID KGP
Sbjct: 12  VVVF-GNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKGP 59


>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score = 36.3 bits (80), Expect = 0.027
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +2

Query: 296 EGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPI 433
           +GT G+  +   C  TG  +  PV  + LGR+ N  G+PID+  P+
Sbjct: 127 DGTEGL-IRGQKCVDTGGPITIPVGPETLGRIINVIGEPIDERGPV 171



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 511 TGISAIDVMNSIARGQKIPIFSAAGL 588
           TGI  +D++   A+G KI +F  AG+
Sbjct: 198 TGIKVVDLLAPYAKGGKIGLFGGAGV 223


>SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)
          Length = 620

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 20/64 (31%), Positives = 34/64 (53%)
 Frame = -2

Query: 444 SSAKIGGPLSMGLPEPLNTRPNMSSETGVRRMSPVNSQSVFFASIPDVPSNTWTTALEPL 265
           SS+ +  P  +  P PL +   ++S + +   SP+ S S   +S P + S +  T+  PL
Sbjct: 181 SSSPLTSPSPLTSPSPLTSSSPLTSSSPLTSSSPLTSSSPLTSSSP-LTSPSPLTSSSPL 239

Query: 264 TSST 253
           TSS+
Sbjct: 240 TSSS 243



 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/56 (32%), Positives = 31/56 (55%)
 Frame = -2

Query: 420 LSMGLPEPLNTRPNMSSETGVRRMSPVNSQSVFFASIPDVPSNTWTTALEPLTSST 253
           +S   P PL +   ++S + +   SP+ S S   +S P + S++  T+  PLTSS+
Sbjct: 165 ISAYFPSPLTSSSPLTSSSPLTSPSPLTSPSPLTSSSP-LTSSSPLTSSSPLTSSS 219



 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/64 (29%), Positives = 34/64 (53%)
 Frame = -2

Query: 444 SSAKIGGPLSMGLPEPLNTRPNMSSETGVRRMSPVNSQSVFFASIPDVPSNTWTTALEPL 265
           SS+ +     +  P PL +   ++S + +   SP+ S S   +S P + S++  T+  PL
Sbjct: 175 SSSPLTSSSPLTSPSPLTSPSPLTSSSPLTSSSPLTSSSPLTSSSP-LTSSSPLTSPSPL 233

Query: 264 TSST 253
           TSS+
Sbjct: 234 TSSS 237


>SB_12162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -2

Query: 756 TVLFKVLLEESGRFHVDTHSGEHNGEVVLVVVQD*LAGNLDKTGLSTDLGGNFIVRQTGG 577
           TV      E  G   +DT + E +G   +   +  + GN       +++GGNF +  T  
Sbjct: 168 TVRKTTYAENGGNVKMDTANAEKSGNFKMDTAKSEIGGNFKMDTAKSEIGGNFKM-DTAN 226

Query: 576 REDG-DLLTT 550
            E+G D+L T
Sbjct: 227 AENGVDVLKT 236


>SB_9151| Best HMM Match : WAP (HMM E-Value=0.045)
          Length = 1865

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 360 HRSLKTCWAVYSTVPANPSTRVPQSWPKTSWTSR 461
           H   +TC+A    +P NP      S   +SWTSR
Sbjct: 148 HEGQRTCFATKQFLPGNPCQWCDPSVSTSSWTSR 181


>SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1565

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +2

Query: 335  EFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINP 478
            E T D +R PV+  +L RV+NGS +  D     LAE+   ++G  + P
Sbjct: 1111 EETRDEIRDPVTRQILDRVYNGSVEFADLWVSGLAEN--PVKGASVGP 1156


>SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 238

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 511 TGISAIDVMNSIARGQKIPIFSAAGL 588
           TGI  ID++   A+G KI +F  AG+
Sbjct: 5   TGIKVIDLIEPYAKGGKIGLFGGAGV 30


>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
          Length = 1039

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/58 (32%), Positives = 31/58 (53%)
 Frame = -2

Query: 447 KSSAKIGGPLSMGLPEPLNTRPNMSSETGVRRMSPVNSQSVFFASIPDVPSNTWTTAL 274
           +S+++IGG +   +  PL+      S + + R  P   QSV   S+PD+ +N  T AL
Sbjct: 355 ESASRIGGCVLRTVSRPLSAPMPRRSISDLARELPTPRQSVRSVSLPDL-TNVETLAL 411


>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -2

Query: 432 IGGPLSMGLPEPLNTRPNMSSETGVRRMSPVNSQSVFFASIPDVPSNTWTT 280
           I G +S  + +   T    S  T +R    +++Q  F   +PD PS+ +T+
Sbjct: 563 ISGDISFAMCDKSITNNTKSFHTKIRTPVQLSNQGSFTRKLPDAPSDHFTS 613


>SB_11794| Best HMM Match : TNFR_c6 (HMM E-Value=1.4e-05)
          Length = 331

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +3

Query: 330 SASSRVTFFVHRSLKTCWAVYSTVPANPSTRVPQSWPKTSWTSRVSPSTHGHVSTQRR 503
           S + ++ F +H +L +      T  ANP+++     P TS  S  +PS   + +T  R
Sbjct: 192 STTCKMGFQLHPNLNSVCIPIPTPTANPTSKPMPQLPPTSPPSTTTPSMPANHTTDNR 249


>SB_53072| Best HMM Match : K_tetra (HMM E-Value=8.2e-31)
          Length = 414

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
 Frame = +3

Query: 66  SHAQATKEHVLAVSRDFISQPRLTYKTVSGV---NGPLVILDEVKFPKFSEIVQ-LKLAD 233
           SH++  K +   +   + ++ RL ++++      NG L++ DEV F  F+E V+  +L +
Sbjct: 31  SHSKRQKHYNDTLQEFYFNRHRLAFESILFYYQSNGRLILPDEVPFRVFTEEVEFFELGE 90

Query: 234 GTLRS 248
             L S
Sbjct: 91  DALNS 95


>SB_20006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +2

Query: 293 FEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPI 472
           F+ T  + +K  LC+FT  +L   +S+ +      G  K I KG  +L    L++Q  P 
Sbjct: 367 FKNTKDVKSKENLCKFTLPLL-IGLSQAL------GVSK-ICKGNEVLISQVLNLQFSPS 418

Query: 473 NPWSR-IYPEEMIK 511
            P SR + P  +++
Sbjct: 419 KPGSRPMLPRPLVR 432


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,515,213
Number of Sequences: 59808
Number of extensions: 659625
Number of successful extensions: 1816
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1813
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)