Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021230
(772 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 174 7e-44
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 151 7e-37
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 43 2e-04
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 35 0.074
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 35 0.074
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 34 0.13
U27312-10|AAA68253.1| 231|Caenorhabditis elegans Hypothetical p... 31 0.69
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 29 4.8
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 29 4.8
U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw (imit... 29 4.8
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 29 4.8
AF039719-12|AAB96758.1| 293|Caenorhabditis elegans Hypothetical... 29 4.8
Z82266-13|CAB05187.1| 1080|Caenorhabditis elegans Hypothetical p... 28 8.5
Z68295-2|CAA92588.1| 1080|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z46241-4|CAA86318.1| 837|Caenorhabditis elegans Hypothetical pr... 28 8.5
L08403-5|AAT92077.1| 531|Caenorhabditis elegans Hypothetical pr... 28 8.5
L08403-4|AAA28021.1| 529|Caenorhabditis elegans Hypothetical pr... 28 8.5
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 174 bits (423), Expect = 7e-44
Identities = 78/86 (90%), Positives = 84/86 (97%)
Frame = +2
Query: 254 VLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPI 433
VLE+S +KAVVQVFEGTSGIDAKNT+CEFTGDILRTPVSEDMLGR+FNGSGKPIDKGPP+
Sbjct: 68 VLEISKNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPPV 127
Query: 434 LAEDFLDIQGQPINPWSRIYPEEMIK 511
LAEDFLDI GQPINPWSRIYPEEMI+
Sbjct: 128 LAEDFLDINGQPINPWSRIYPEEMIQ 153
Score = 141 bits (341), Expect = 6e-34
Identities = 76/115 (66%), Positives = 82/115 (71%)
Frame = +1
Query: 418 QGSPNLGRRLLGHPGSAHQPMVTYLPRGDD*TGISAIDVMNSIARGQKIPIFSAAGLPHN 597
+G P L L G P P TGISAIDVMNSIARGQKIPIFSA+GLPHN
Sbjct: 123 KGPPVLAEDFLDINGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSASGLPHN 182
Query: 598 EIAAQICRQAGLVKVPGKSVLDDHEDNFAIVFAAMGVNMETARFFKQDFEENGSM 762
EIAAQI RQ GLV++P + + NFAIVFAAMGVNMETARFFKQDFEENGSM
Sbjct: 183 EIAAQIVRQGGLVQLPDR---PHEQTNFAIVFAAMGVNMETARFFKQDFEENGSM 234
Score = 75.4 bits (177), Expect = 4e-14
Identities = 34/55 (61%), Positives = 45/55 (81%)
Frame = +3
Query: 90 HVLAVSRDFISQPRLTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQ 254
H A+ R++ + PRL Y+TV GVNGPLVIL++VKFP+FSEIV++ L DG+ RSGQ
Sbjct: 13 HKSAIIRNYNTNPRLIYQTVCGVNGPLVILNDVKFPQFSEIVKITLPDGSKRSGQ 67
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 151 bits (365), Expect = 7e-37
Identities = 68/86 (79%), Positives = 78/86 (90%)
Frame = +2
Query: 254 VLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPI 433
VLE S +KAVVQVFEGT+G+DAK T CEFTGDI R+PVS DMLGR+FNGSGKPIDKGPP+
Sbjct: 80 VLESSKNKAVVQVFEGTTGVDAKFTTCEFTGDIFRSPVSLDMLGRIFNGSGKPIDKGPPV 139
Query: 434 LAEDFLDIQGQPINPWSRIYPEEMIK 511
L ED+LDI GQPINP++RIYPEEMI+
Sbjct: 140 LPEDYLDINGQPINPFNRIYPEEMIQ 165
Score = 140 bits (338), Expect = 1e-33
Identities = 77/115 (66%), Positives = 83/115 (72%)
Frame = +1
Query: 418 QGSPNLGRRLLGHPGSAHQPMVTYLPRGDD*TGISAIDVMNSIARGQKIPIFSAAGLPHN 597
+G P L L G P P TGISAIDVMNSIARGQKIPIFSAAGLPHN
Sbjct: 135 KGPPVLPEDYLDINGQPINPFNRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHN 194
Query: 598 EIAAQICRQAGLVKVPGKSVLDDHEDNFAIVFAAMGVNMETARFFKQDFEENGSM 762
EIAAQI RQ GLV++PG+ ++ NFAIVFAAMGVNMETARFFKQDFEE GSM
Sbjct: 195 EIAAQIVRQGGLVQLPGR---NNETVNFAIVFAAMGVNMETARFFKQDFEECGSM 246
Score = 66.5 bits (155), Expect = 2e-11
Identities = 29/55 (52%), Positives = 43/55 (78%)
Frame = +3
Query: 90 HVLAVSRDFISQPRLTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQ 254
H A+ +++ ++P+LTY+TV GVNGPLVI+ VKFP F+EIV++ L +G +R GQ
Sbjct: 25 HRTALIQNYSTKPKLTYQTVFGVNGPLVIVHNVKFPMFNEIVKITLPNGQIRMGQ 79
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Frame = +2
Query: 254 VLEVS---GSKAVVQV-FEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 421
+LEVS G V + +GT G+ + + TGD ++ PV + LGR+ N G+PID+
Sbjct: 105 ILEVSQHLGDNVVRCIAMDGTEGLVRGQPVAD-TGDPIKIPVGPETLGRIMNVIGEPIDE 163
Query: 422 GPPILAEDFLDIQGQ 466
PI +++F I +
Sbjct: 164 RGPIASKNFAAIHAE 178
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 511 TGISAIDVMNSIARGQKIPIFSAAGL 588
TGI +D++ A+G KI +F AG+
Sbjct: 194 TGIKVVDLLAPYAKGGKIGLFGGAGV 219
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 34.7 bits (76), Expect = 0.074
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 284 VQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPID-KGP 427
V VF G + + + + TG I+ PV + +LGRV + G PID KGP
Sbjct: 74 VVVF-GNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGP 121
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 34.7 bits (76), Expect = 0.074
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 284 VQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPID-KGP 427
V VF G + + + + TG I+ PV + +LGRV + G PID KGP
Sbjct: 101 VVVF-GNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGP 148
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/54 (27%), Positives = 30/54 (55%)
Frame = +2
Query: 254 VLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPI 415
++ + G A +QV+E TSG+ + + TG L + ++G +F+G +P+
Sbjct: 43 IIRLEGDYATIQVYEETSGVTIGDPVLR-TGKPLSVELGPGIMGSIFDGIQRPL 95
>U27312-10|AAA68253.1| 231|Caenorhabditis elegans Hypothetical
protein F26A1.12 protein.
Length = 231
Score = 31.5 bits (68), Expect = 0.69
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 239 PSFWSVLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDIL 355
P WS++ +QVF G +G++ N C G +L
Sbjct: 74 PGGWSLIHRRRGPWCIQVFNGAAGLEGSNNACRAQGAVL 112
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 28.7 bits (61), Expect = 4.8
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Frame = -2
Query: 624 LSTDLGGNFIVRQTGGREDGDLLTTGNRVHHINSGDTSLIISSG*IRDHGLMG*PWMSKK 445
LSTD+ GNF+ T DG+ +H + D S + + D G + P
Sbjct: 3706 LSTDVSGNFVYPVTESPNDGE-----KPIHPVLGPDGSPLPTD----DSGAVIGPDGEVI 3756
Query: 444 SSAKIGGPLS-MGLPEPLNTRPN---MSSETGVRRMSPVN 337
+ G PLS +GLP P ++ N +SS+T V + P +
Sbjct: 3757 PTDASGVPLSKLGLPLPTDSDGNYIILSSDTDVTKELPTD 3796
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 28.7 bits (61), Expect = 4.8
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Frame = -2
Query: 624 LSTDLGGNFIVRQTGGREDGDLLTTGNRVHHINSGDTSLIISSG*IRDHGLMG*PWMSKK 445
LSTD+ GNF+ T DG+ +H + D S + + D G + P
Sbjct: 3751 LSTDVSGNFVYPVTESPNDGE-----KPIHPVLGPDGSPLPTD----DSGAVIGPDGEVI 3801
Query: 444 SSAKIGGPLS-MGLPEPLNTRPN---MSSETGVRRMSPVN 337
+ G PLS +GLP P ++ N +SS+T V + P +
Sbjct: 3802 PTDASGVPLSKLGLPLPTDSDGNYIILSSDTDVTKELPTD 3841
>U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw
(imitation swi) homologprotein 1 protein.
Length = 1009
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = -2
Query: 612 LGGNFIVRQTGGREDGDLLTTGNRVHHINSGDTS-LIISSG*IRDHGLMG*PWMSKKSSA 436
+ G+ R+T ED +++ + + D S I +G +RD+ + G W++
Sbjct: 90 IDGDHRHRKTEQEEDEEMVADAIKSDDLVIFDKSPFYIENGEMRDYQVRGLNWLASLQHN 149
Query: 435 KIGGPLS--MGLPEPLNT 388
KI G L+ MGL + L T
Sbjct: 150 KINGILADEMGLGKTLQT 167
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 28.7 bits (61), Expect = 4.8
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Frame = -2
Query: 624 LSTDLGGNFIVRQTGGREDGDLLTTGNRVHHINSGDTSLIISSG*IRDHGLMG*PWMSKK 445
LSTD+ GNF+ T DG+ +H + D S + + D G + P
Sbjct: 3751 LSTDVSGNFVYPVTESPNDGE-----KPIHPVLGPDGSPLPTD----DSGAVIGPDGEVI 3801
Query: 444 SSAKIGGPLS-MGLPEPLNTRPN---MSSETGVRRMSPVN 337
+ G PLS +GLP P ++ N +SS+T V + P +
Sbjct: 3802 PTDASGVPLSKLGLPLPTDSDGNYIILSSDTDVTKELPTD 3841
>AF039719-12|AAB96758.1| 293|Caenorhabditis elegans Hypothetical
protein K04F10.7 protein.
Length = 293
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 95 PGSLQGLHFPA*AHLQDCVWCKRSSRHLG 181
PG+ Q A H Q CVWC + R G
Sbjct: 39 PGTCQYCKLNAAFHDQKCVWCSHAERKFG 67
>Z82266-13|CAB05187.1| 1080|Caenorhabditis elegans Hypothetical
protein F23B2.12 protein.
Length = 1080
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 60 VISHAQATKEHVLAVSRDFISQPRLTYKTVSGVNGPLVILDE 185
+I +A T S+ + R + VSGV GP V+LD+
Sbjct: 55 LIGNASGTFTQRYLYSQQYTLHQRTAFLYVSGVEGPNVVLDD 96
>Z68295-2|CAA92588.1| 1080|Caenorhabditis elegans Hypothetical
protein F23B2.12 protein.
Length = 1080
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 60 VISHAQATKEHVLAVSRDFISQPRLTYKTVSGVNGPLVILDE 185
+I +A T S+ + R + VSGV GP V+LD+
Sbjct: 55 LIGNASGTFTQRYLYSQQYTLHQRTAFLYVSGVEGPNVVLDD 96
>Z46241-4|CAA86318.1| 837|Caenorhabditis elegans Hypothetical
protein C38D4.5 protein.
Length = 837
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -2
Query: 408 LPEPLNTRPNMSSETGVRRMSPVNSQSVFFASIPDVPSNTWTTALEPLTSST-DQNEGFH 232
+P N + VRR SP N +SV F + V N + P TSS+ D + +H
Sbjct: 291 IPPDANETSKTPTAIRVRRPSPTNLRSVSFQNKCTVLKNVPMPQVLPTTSSSFDHHPQYH 350
>L08403-5|AAT92077.1| 531|Caenorhabditis elegans Hypothetical
protein F42H10.7b protein.
Length = 531
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 680 SPLCSPLWVSTWKRPDSSSRT 742
SP SP +S W RP SS R+
Sbjct: 452 SPFASPKIMSNWSRPSSSKRS 472
>L08403-4|AAA28021.1| 529|Caenorhabditis elegans Hypothetical
protein F42H10.7a protein.
Length = 529
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 680 SPLCSPLWVSTWKRPDSSSRT 742
SP SP +S W RP SS R+
Sbjct: 450 SPFASPKIMSNWSRPSSSKRS 470
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,716,602
Number of Sequences: 27780
Number of extensions: 463646
Number of successful extensions: 1502
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1500
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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