Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021230
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.1  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    23   3.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.1  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   4.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   5.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   7.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.6  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 452 PRSLRPRLGDPCRWVC 405
           P  ++ + GD C WVC
Sbjct: 455 PGMIKKQQGDTCCWVC 470


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 410 VCRNR*IHGPTCLQRPVYEECH 345
           VCRN    G  C +   Y +CH
Sbjct: 111 VCRNEEYTGDDCQKTYQYVQCH 132


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 452 PRSLRPRLGDPCRWVC 405
           P  ++ + GD C WVC
Sbjct: 545 PGMIKKQQGDTCCWVC 560


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 423 PLSMGLPEPLNTRPNMSSETGVRRMSPVNSQSVF 322
           PLS      +NT+P M SE G   +     Q +F
Sbjct: 270 PLSSRSLYYVNTKPFMKSEYGANNVQYQGVQDIF 303


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 744 KVLLEESGRFHVDTHSGEHNGEVV 673
           K +LE+       T  GEHNG+ V
Sbjct: 111 KSILEKKPELVDATDPGEHNGDTV 134


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 344 GDILRTPVSEDMLGRVFNGSGKPIDKGPP 430
           G +L + ++   +  +FN SG PI K  P
Sbjct: 349 GCLLVSGIASAKVRSMFNDSGNPILKAKP 377


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 590 LTMKLPPRSVDRPVLSRFPASQSWTT 667
           + +KL P  +DR V S   AS  WTT
Sbjct: 162 MNLKLYP--LDRQVCSLRMASYGWTT 185


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 590 LTMKLPPRSVDRPVLSRFPASQSWTT 667
           + +KL P  +DR V S   AS  WTT
Sbjct: 162 MNLKLYP--LDRQVCSLRMASYGWTT 185


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,531
Number of Sequences: 438
Number of extensions: 5437
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)