Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021229
         (752 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    25   0.65 
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    25   0.86 
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            24   1.1  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    24   1.1  
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    23   2.0  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    23   2.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.0  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   2.6  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   2.6  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    23   3.5  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   3.5  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   3.5  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   3.5  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   3.5  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   3.5  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    23   3.5  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   3.5  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    23   3.5  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   3.5  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 664 ATPPPPRSLSATPVASQ 714
           ++PPPP  +SA P  SQ
Sbjct: 328 SSPPPPYQISAQPTPSQ 344


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 120 VGDGSWNLTIYVTDLNEKRTMVVKGDMHIGG 212
           +G G+++++I   D      +   GD H+GG
Sbjct: 27  LGGGTFDVSILTIDNGVFEVVATSGDTHLGG 57


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
 Frame = -2

Query: 322 GVFW----SGEPFVSSRPPEGMVRPIFLNSLPKLSVSFSITP 209
           G FW    SG P  ++ P EG     F+NS P ++   +  P
Sbjct: 34  GGFWLAAASGAPHPAALPIEGCNETGFINSQPSMAEFMTALP 75


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
 Frame = -2

Query: 322 GVFW----SGEPFVSSRPPEGMVRPIFLNSLPKLSVSFSITP 209
           G FW    SG P  ++ P EG     F+NS P ++   +  P
Sbjct: 34  GGFWLAAASGAPHPAALPIEGCNETGFINSQPSMAEFMTALP 75


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 120 VGDGSWNLTIYVTDLNEKRTMVVKGDMHIGGVML--KLTESFGKEFKKIGRTMPSG 281
           +G G++++++   +          GD H+GG     +L E   ++FKK  +   SG
Sbjct: 28  LGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVEYCTQDFKKKHKADISG 83


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 120 VGDGSWNLTIYVTDLNEKRTMVVKGDMHIGGVML--KLTESFGKEFKKIGRTMPSG 281
           +G G++++++   +          GD H+GG     +L E   ++FKK  +   SG
Sbjct: 28  LGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVEYCTQDFKKKHKADISG 83


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 550  NLKEAKRIKNTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPPPRSLSATP 702
            +L +   +K+   PD     +A +GSS+S +    P   T  PP S S+ P
Sbjct: 1072 HLSKMHFVKDGVIPDPVALKSAQQGSSSSSE--GVPLKGTAVPPPSGSSGP 1120


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 522 LERIASDSSSECLIPRFLHSC 460
           +E+I + SS EC+    LH C
Sbjct: 74  VEKILTQSSFECIHLSVLHKC 94


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 174 VFRSDPSHKS*GSTTHHQLFHRPPTFSLVRLIKL 73
           + RS+PS +        QL HR PTF+ + L  +
Sbjct: 606 IIRSNPSLEEKLQIFALQLTHRAPTFTALGLFPI 639


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 132 THHQLFHRPPTFSLVRLIKLI 70
           TH + FH   T SL R IK++
Sbjct: 253 THRKPFHPASTQSLSRWIKMV 273


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 288 LETNGSPDQNTPWTST 335
           L TNG+P ++TP  ST
Sbjct: 116 LSTNGAPPRSTPPLST 131


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 288 LETNGSPDQNTPWTST 335
           L TNG+P ++TP  ST
Sbjct: 116 LSTNGAPPRSTPPLST 131


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 288 LETNGSPDQNTPWTST 335
           L TNG+P ++TP  ST
Sbjct: 116 LSTNGAPPRSTPPLST 131


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 288 LETNGSPDQNTPWTST 335
           L TNG+P ++TP  ST
Sbjct: 116 LSTNGAPPRSTPPLST 131


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 288 LETNGSPDQNTPWTST 335
           L TNG+P ++TP  ST
Sbjct: 116 LSTNGAPPRSTPPLST 131


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 288 LETNGSPDQNTPWTST 335
           L TNG+P ++TP  ST
Sbjct: 72  LSTNGAPPRSTPPLST 87


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 288 LETNGSPDQNTPWTST 335
           L TNG+P ++TP  ST
Sbjct: 116 LSTNGAPPRSTPPLST 131


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 288 LETNGSPDQNTPWTST 335
           L TNG+P ++TP  ST
Sbjct: 116 LSTNGAPPRSTPPLST 131


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 288 LETNGSPDQNTPWTST 335
           L TNG+P ++TP  ST
Sbjct: 116 LSTNGAPPRSTPPLST 131


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,416
Number of Sequences: 336
Number of extensions: 3520
Number of successful extensions: 20
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)