Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021229
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch... 31 0.18
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 29 0.71
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 29 0.94
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 28 1.6
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 27 2.2
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 27 2.9
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 27 3.8
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S... 26 5.0
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 26 6.6
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 25 8.8
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 8.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 8.8
>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 31.1 bits (67), Expect = 0.18
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = -3
Query: 438 IEKSILQSMNLKSGSWILSGLCMGVKCRAASA*TPYWSRVCFGLESHLFLVGHQRAW 268
I+KS+ + + LK+ W++ LC+ + T +S + G+ + L +VG+Q W
Sbjct: 36 IDKSLNRKLKLKTDLWVMPLLCLISAFQYMDKSTSNYSSI-MGIRTDLNMVGNQYNW 91
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 29.1 bits (62), Expect = 0.71
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +1
Query: 625 SSNSLDRSN--GPCPATPPPPRSLSATPVASQQNGTLRR 735
SSNSL S G A+P P S SA+P S +NG L R
Sbjct: 283 SSNSLYESYRLGSQIASPSPSVSGSASPTKSNKNGVLNR 321
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.7 bits (61), Expect = 0.94
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = +1
Query: 472 KSWYKAF*RTIAGYPLEASHLKQNYQNLKEAKRIKNTQAPDTNTFIAATRGSSNSLDRSN 651
KSW ++ I+ +S ++ + K DT++ +++T ++SL S
Sbjct: 115 KSWSRSLSNNISLSQSSSSPATSSFSDPKAFSAGVPKFTSDTSSTVSSTPSLNHSLQNSM 174
Query: 652 GPCPATPPP 678
P TPPP
Sbjct: 175 PPSTPTPPP 183
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 159 DLNEKRTMVVKGDMHIGGVMLKLTESFGKE 248
++++ T+ GD HIG ++ K E GKE
Sbjct: 174 EISQVATISANGDTHIGELLAKAMERVGKE 203
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -3
Query: 507 SDSSSECL-IPRFLHSCITALNVSIEKSILQSMNLKSGSWILSGLCM 370
+++SS L IP+ +CI+ +V I S+L ++ + G+ ++ G +
Sbjct: 318 TNTSSRILGIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSL 364
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 607 IAATRGSSNSLDRSNGPCPATPPPPRSLSATPVAS 711
+AAT+ ++ L+ S P P TP RSL+ TP +S
Sbjct: 589 LAATQPVTSVLNTS--PLPKTPEKDRSLNVTPSSS 621
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 111 GEIVGDGSWNLTIYVTDLNEKRTMVVK 191
GEI+G+GS++ + T+ + KR +K
Sbjct: 102 GEILGEGSYSTVLTATENSTKREYAIK 128
>SPAC227.07c |pab1||protein phosphatase regulatory subunit
Pab1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 5.0
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 302 LSRPKHTLDQYGVHADAA-LHFTPMHKPLRIQLPDLRFIDCKIDFSIDTFS 451
LSR TL + V+ + A + P+H LR +L DL DC D TFS
Sbjct: 300 LSRDYLTLKIWDVNMEKAPVKTIPLHDVLRSKLCDLYENDCIFDKFECTFS 350
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 526 SHLKQNYQNLKEAKRIKNTQAPDTNT 603
S +K Y + E R+KNTQ+ TNT
Sbjct: 534 SRIKWIYMIIDEGHRMKNTQSKLTNT 559
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 120 VGDGSWNLTIYVTDLNEKRTMVVKGDMHIGGVML--KLTESFGKEFKK 257
+G G++++++ + GD H+GG +L F +EFK+
Sbjct: 198 LGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFAQEFKR 245
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Frame = +3
Query: 117 IVGDGSWNLTIYVTDLNEKRT-----MVVKGDMHIGGVMLKLT 230
+V D S NL + D + +V +GD HIG V+ +T
Sbjct: 1270 VVADTSGNLRLLAYDPENPESHSGERLVTRGDFHIGNVITAMT 1312
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 646 SNGPCPATPPPPRSLSATPVASQQNG 723
SN P PPPPRS +A + G
Sbjct: 332 SNSSLPPPPPPPRSNAAGSIPLPPQG 357
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,854,542
Number of Sequences: 5004
Number of extensions: 56843
Number of successful extensions: 206
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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