Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021229
(752 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36075| Best HMM Match : CCD (HMM E-Value=4.3) 124 6e-29
SB_9942| Best HMM Match : CCD (HMM E-Value=4.3) 124 6e-29
SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.082
SB_6651| Best HMM Match : Death (HMM E-Value=2.2e-18) 31 0.76
SB_47441| Best HMM Match : NOT2_3_5 (HMM E-Value=0) 31 1.0
SB_74| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_40105| Best HMM Match : La (HMM E-Value=4.3) 30 2.3
SB_34066| Best HMM Match : Queuosine_synth (HMM E-Value=2) 30 2.3
SB_6955| Best HMM Match : Borrelia_orfA (HMM E-Value=2.1) 30 2.3
SB_43624| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_42064| Best HMM Match : Queuosine_synth (HMM E-Value=2.4) 30 2.3
SB_27266| Best HMM Match : GBP_C (HMM E-Value=1.4) 30 2.3
SB_26747| Best HMM Match : CX (HMM E-Value=7.7) 30 2.3
SB_14631| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_12750| Best HMM Match : CX (HMM E-Value=7.7) 30 2.3
SB_16872| Best HMM Match : ARM_1 (HMM E-Value=0) 29 3.1
SB_41738| Best HMM Match : EGF (HMM E-Value=0.053) 28 7.1
SB_59189| Best HMM Match : Choline_kin_N (HMM E-Value=2.8) 28 9.4
SB_28106| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
>SB_36075| Best HMM Match : CCD (HMM E-Value=4.3)
Length = 146
Score = 124 bits (300), Expect = 6e-29
Identities = 52/87 (59%), Positives = 64/87 (73%)
Frame = +2
Query: 248 VQEDWSDHALWWPTRNKWLSRPKHTLDQYGVHADAALHFTPMHKPLRIQLPDLRFIDCKI 427
+ DWSDH LWWP R +WL +P+ TLD GV DA LHFTP+HK +R+QLPDL+F++ +
Sbjct: 46 ISADWSDHGLWWPQRRQWLLKPRITLDTCGVQGDAKLHFTPIHKKVRVQLPDLQFVELSM 105
Query: 428 DFSIDTFSAVIQLCKNLGIRHSEELSL 508
DFS F AV +LC LGIRH EELSL
Sbjct: 106 DFSKKVFVAVQELCAELGIRHPEELSL 132
Score = 37.9 bits (84), Expect = 0.009
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +3
Query: 132 SWNLTIYVTDLNEKRTMVVKGDMHIGGVMLKLTE 233
+WNL++++T L+ ++ + V G HIG +ML L E
Sbjct: 9 NWNLSVFITSLSTEKPVEVTGQTHIGKLMLDLVE 42
>SB_9942| Best HMM Match : CCD (HMM E-Value=4.3)
Length = 146
Score = 124 bits (300), Expect = 6e-29
Identities = 52/87 (59%), Positives = 64/87 (73%)
Frame = +2
Query: 248 VQEDWSDHALWWPTRNKWLSRPKHTLDQYGVHADAALHFTPMHKPLRIQLPDLRFIDCKI 427
+ DWSDH LWWP R +WL +P+ TLD GV DA LHFTP+HK +R+QLPDL+F++ +
Sbjct: 46 ISADWSDHGLWWPQRRQWLLKPRITLDTCGVQGDAKLHFTPIHKKVRVQLPDLQFVELSM 105
Query: 428 DFSIDTFSAVIQLCKNLGIRHSEELSL 508
DFS F AV +LC LGIRH EELSL
Sbjct: 106 DFSKKVFVAVQELCAELGIRHPEELSL 132
Score = 37.9 bits (84), Expect = 0.009
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +3
Query: 132 SWNLTIYVTDLNEKRTMVVKGDMHIGGVMLKLTE 233
+WNL++++T L+ ++ + V G HIG +ML L E
Sbjct: 9 NWNLSVFITSLSTEKPVEVTGQTHIGKLMLDLVE 42
>SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1089
Score = 34.7 bits (76), Expect = 0.082
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Frame = +1
Query: 571 IKNTQ-APDTNTFIAATRGSSNSLD----RSNGPCPATPPPPRSLSAT---PVASQQNGT 726
IKN + AP NT ++RG S S RS P+TPPPP S+T PV + G
Sbjct: 893 IKNRRRAPIPNTGSESSRGDSGSTRTSPIRSTSTIPSTPPPPGGSSSTENSPVLETERGD 952
Query: 727 L 729
L
Sbjct: 953 L 953
>SB_6651| Best HMM Match : Death (HMM E-Value=2.2e-18)
Length = 466
Score = 31.5 bits (68), Expect = 0.76
Identities = 24/86 (27%), Positives = 39/86 (45%)
Frame = +3
Query: 81 LNELVKMLADGEIVGDGSWNLTIYVTDLNEKRTMVVKGDMHIGGVMLKLTESFGKEFKKI 260
+N +VK + + E++ + TI+ + N+K +V D + GG+ KL F KE I
Sbjct: 366 MNRIVKKVENAEVIPPSAVGATIFEDEKNKKAIGMVTRDSN-GGLKAKL---FTKE--DI 419
Query: 261 GRTMPSGGRLETNGSPDQNTPWTSTE 338
G + D+ P TS E
Sbjct: 420 SNLTTGNGEKKQTTETDEKQPSTSCE 445
>SB_47441| Best HMM Match : NOT2_3_5 (HMM E-Value=0)
Length = 584
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +1
Query: 613 ATRGSSNSLDRSNGPCPATPPPPRSLSATPVASQQN 720
+T G S R + P P TPPPP S A SQQN
Sbjct: 151 STNGEETSPVRKSPP-PTTPPPPVSGYAVVAGSQQN 185
>SB_74| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 711
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/87 (20%), Positives = 36/87 (41%)
Frame = +3
Query: 123 GDGSWNLTIYVTDLNEKRTMVVKGDMHIGGVMLKLTESFGKEFKKIGRTMPSGGRLETNG 302
GDG++ ++ + +V + +IGG + + +KK+G+ + + G E G
Sbjct: 384 GDGTYTVSYEPNQRGNHKIIVTIRNRNIGGSPFSVNVTGRMNYKKLGKAIRTFGS-EGAG 442
Query: 303 SPDQNTPWTSTEFTRTPPYTSRPCTNH 383
+ + PW + C NH
Sbjct: 443 GGEFSIPWAVAIDEENECFIVTDCNNH 469
>SB_40105| Best HMM Match : La (HMM E-Value=4.3)
Length = 434
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 556 KEAKRIK-NTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPPPRSLSATPVASQQN-GTL 729
K +R+ +TQ N+F+ + S + PPPP LS +S + GT+
Sbjct: 14 KHLRRVAPSTQQVSLNSFVTVQKQESEQNSSAAERTMTVPPPPVDLSQVASSSDSSKGTI 73
Query: 730 RRY 738
++Y
Sbjct: 74 KKY 76
>SB_34066| Best HMM Match : Queuosine_synth (HMM E-Value=2)
Length = 318
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 556 KEAKRIK-NTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPPPRSLSATPVASQQN-GTL 729
K +R+ +TQ N+F+ + S + PPPP LS +S + GT+
Sbjct: 14 KHLRRVAPSTQQVSLNSFVTVQKQESEQNSSAAERTMTVPPPPVDLSQVASSSDSSKGTI 73
Query: 730 RRY 738
++Y
Sbjct: 74 KKY 76
>SB_6955| Best HMM Match : Borrelia_orfA (HMM E-Value=2.1)
Length = 530
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 556 KEAKRIK-NTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPPPRSLSATPVASQQN-GTL 729
K +R+ +TQ N+F+ + S + PPPP LS +S + GT+
Sbjct: 56 KHLRRVAPSTQQVSLNSFVTVQKQESEQNSSAAERTMTVPPPPVDLSQVASSSDSSKGTI 115
Query: 730 RRY 738
++Y
Sbjct: 116 KKY 118
>SB_43624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1018
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 556 KEAKRIK-NTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPPPRSLSATPVASQQN-GTL 729
K +R+ +TQ N+F+ + S + PPPP LS +S + GT+
Sbjct: 544 KHLRRVAPSTQQVSLNSFVTVQKQESEQNSSAAERTMTVPPPPVDLSQVASSSDSSKGTI 603
Query: 730 RRY 738
++Y
Sbjct: 604 KKY 606
>SB_42064| Best HMM Match : Queuosine_synth (HMM E-Value=2.4)
Length = 623
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 556 KEAKRIK-NTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPPPRSLSATPVASQQN-GTL 729
K +R+ +TQ N+F+ + S + PPPP LS +S + GT+
Sbjct: 14 KHLRRVAPSTQQVSLNSFVTVQKQESEQNSSAAERTMTVPPPPVDLSQVASSSDSSKGTI 73
Query: 730 RRY 738
++Y
Sbjct: 74 KKY 76
>SB_27266| Best HMM Match : GBP_C (HMM E-Value=1.4)
Length = 934
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 556 KEAKRIK-NTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPPPRSLSATPVASQQN-GTL 729
K +R+ +TQ N+F+ + S + PPPP LS +S + GT+
Sbjct: 135 KHLRRVAPSTQQVSLNSFVTVQKQESEQNSSAAERTMTVPPPPVDLSQVASSSDSSKGTI 194
Query: 730 RRY 738
++Y
Sbjct: 195 KKY 197
>SB_26747| Best HMM Match : CX (HMM E-Value=7.7)
Length = 156
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 556 KEAKRIK-NTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPPPRSLSATPVASQQN-GTL 729
K +R+ +TQ N+F+ + S + PPPP LS +S + GT+
Sbjct: 14 KHLRRVAPSTQQVSLNSFVTVQKQESEQNSSAAERTMTVPPPPVDLSQVASSSDSSKGTI 73
Query: 730 RRY 738
++Y
Sbjct: 74 KKY 76
>SB_14631| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 556 KEAKRIK-NTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPPPRSLSATPVASQQN-GTL 729
K +R+ +TQ N+F+ + S + PPPP LS +S + GT+
Sbjct: 56 KHLRRVAPSTQQVSLNSFVTVQKQESEQNSSAAERTMTVPPPPVDLSQVASSSDSSKGTI 115
Query: 730 RRY 738
++Y
Sbjct: 116 KKY 118
>SB_12750| Best HMM Match : CX (HMM E-Value=7.7)
Length = 279
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 556 KEAKRIK-NTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPPPRSLSATPVASQQN-GTL 729
K +R+ +TQ N+F+ + S + PPPP LS +S + GT+
Sbjct: 56 KHLRRVAPSTQQVSLNSFVTVQKQESEQNSSAAERTMTVPPPPVDLSQVASSSDSSKGTI 115
Query: 730 RRY 738
++Y
Sbjct: 116 KKY 118
>SB_16872| Best HMM Match : ARM_1 (HMM E-Value=0)
Length = 401
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 547 QNLKEAKRIKNTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPP 678
+ L R++++ P T++ A T + N P PATPPP
Sbjct: 204 KRLHRPTRVQSSPGPRTSSSAAETPNIRPATAVPNAPPPATPPP 247
>SB_41738| Best HMM Match : EGF (HMM E-Value=0.053)
Length = 198
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +1
Query: 562 AKRIKNTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPPPRSLSATPVASQQNGTLR 732
A R+ T+ P ++ A + +++D+ N +P PP +L TP+ Q + TL+
Sbjct: 9 ALRVDTTRIP----YLRADDTNKDTVDKHNPLHNPSPTPPTALLITPLTKQTHMTLQ 61
>SB_59189| Best HMM Match : Choline_kin_N (HMM E-Value=2.8)
Length = 532
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 556 KEAKRIK-NTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPPPRSLSATPVASQQN-GTL 729
K +R+ +TQ N+F+ + S + PPPP LS +S + GT+
Sbjct: 105 KHLRRVAPSTQQVSLNSFVTVQKQESEQNSSAAERTMTVPPPPVDLSQVASSSDSSKGTI 164
Query: 730 RRY 738
+++
Sbjct: 165 KKW 167
>SB_28106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1206
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +3
Query: 321 PWTSTEF-TRTPPYTSRPCT 377
PW++ TR PP ++RPCT
Sbjct: 879 PWSNRHLDTRAPPISARPCT 898
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,146,263
Number of Sequences: 59808
Number of extensions: 454833
Number of successful extensions: 1746
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1734
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -