Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021229
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.4  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   5.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.4  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 171 KRTMVVKGDMHIGGVMLKLTESFGKEFKKIGRTMPSGG 284
           K+  VV+GD+ +GG+M+       ++    G  MP GG
Sbjct: 108 KKEAVVEGDLVLGGLMMVHER---QDRLTCGPVMPQGG 142


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 640 DRSNGPCPATPPPPRSLS 693
           D    P PA PPPP S S
Sbjct: 334 DSDTPPKPAPPPPPPSSS 351


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +2

Query: 371 MHKPLRIQLPDLRFIDCKIDFSIDTFSAVIQLCKN 475
           +H      +  L F DC +   +  FSA+ ++ +N
Sbjct: 76  LHTATNYFVTSLAFADCLVGLVVMPFSAIYEVLEN 110


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -2

Query: 175 RFSFRSVT*IVRFHDPSPTISPSANIFTSSFN*TY*LQVSLPSAHC 38
           R+S R  + IV    PS + SPS ++ TS  +  +  + S  + HC
Sbjct: 23  RYSKRFSSSIVDRRSPSSSRSPSPSLLTSQPHQDHNKEKSKNNHHC 68


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -1

Query: 728 SVPFCCDATGVAESDLGGGGVAGHGPFDLSKLFEEP 621
           + P    A GVA +  GG G  G   +     +E+P
Sbjct: 582 TTPLFTPAVGVAAASAGGAGGGGARSYVDPHTYEDP 617


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 695 AESDLGGGGVAGHGPFDLSKLFEEPLVAAMNVFVSGA 585
           A+ DL G     +   D+S  FE+PLV  +   +  A
Sbjct: 483 ADDDLFGPASPAYVHEDVSPTFEKPLVREIEKTIDDA 519


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = -3

Query: 396 SWILSGLCMGVKCRAASA*T 337
           +W+L  +C+G+ C+  ++ T
Sbjct: 3   TWLLLVVCLGIACQGITSVT 22


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +1

Query: 661 PATPPPPRSLSATPVASQQNGT 726
           P TP PPR     P +  Q  T
Sbjct: 393 PCTPSPPRGPGGVPTSVIQAAT 414


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -1

Query: 719 FCCDATGVAESDLGGGGVAG 660
           +CCD  G   S   GG V G
Sbjct: 14  WCCDNLGGPGSSSAGGVVTG 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,536
Number of Sequences: 438
Number of extensions: 4438
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)