Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021229
(752 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34440.1 68417.m04894 protein kinase family protein contains ... 34 0.088
At1g49730.2 68414.m05577 protein kinase family protein contains ... 33 0.20
At1g49730.1 68414.m05575 protein kinase family protein contains ... 33 0.20
At4g15410.1 68417.m02355 UBX domain-containing protein low simil... 29 2.5
At5g12350.1 68418.m01453 zinc finger protein, putative / regulat... 29 3.3
At3g19120.1 68416.m02428 expressed protein 29 3.3
At2g37580.1 68415.m04610 zinc finger (C3HC4-type RING finger) fa... 29 3.3
At1g07240.1 68414.m00770 UDP-glucoronosyl/UDP-glucosyl transfera... 29 4.4
At5g65380.1 68418.m08223 ripening-responsive protein, putative s... 28 5.8
At5g54310.1 68418.m06764 ARF GAP-like zinc finger-containing pro... 28 5.8
At5g19420.1 68418.m02314 zinc finger protein, putative / regulat... 28 5.8
At3g09880.1 68416.m01178 serine/threonine protein phosphatase 2A... 28 5.8
At1g14710.2 68414.m01759 hydroxyproline-rich glycoprotein family... 28 5.8
At1g14710.1 68414.m01758 hydroxyproline-rich glycoprotein family... 28 5.8
At2g11090.1 68415.m01187 expressed protein 28 7.7
At1g13830.1 68414.m01623 beta-1,3-glucanase-related similar to b... 28 7.7
At1g08430.1 68414.m00932 expressed protein contains Pfam profile... 28 7.7
>At4g34440.1 68417.m04894 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 670
Score = 34.3 bits (75), Expect = 0.088
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +1
Query: 571 IKNTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPPPRSLSATP 702
+ ++ AP+T+ + G+S S + S+ P P + PPP S+SA P
Sbjct: 6 VDSSPAPETSNGTPPSNGTSPS-NESSPPTPPSSPPPSSISAPP 48
>At1g49730.2 68414.m05577 protein kinase family protein contains
Pfam PF00069: Protein kinase domain; similar to AtPK2324
(GI:1785621) [Arabidopsis thaliana]; similar to
receptor-like protein kinase (GI:1644291) [Catharanthus
roseus]; similar to somatic embryogenesis receptor-like
kinase (GI:2224911) [Daucus carota]
Length = 450
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 383 LRIQLPDLRFIDCKIDFSIDTFSAVIQLCKNL 478
L QLP L DC +DFS F+ V +C N+
Sbjct: 16 LATQLPSLMAADCPLDFSGSNFTLVATVCSNI 47
>At1g49730.1 68414.m05575 protein kinase family protein contains
Pfam PF00069: Protein kinase domain; similar to AtPK2324
(GI:1785621) [Arabidopsis thaliana]; similar to
receptor-like protein kinase (GI:1644291) [Catharanthus
roseus]; similar to somatic embryogenesis receptor-like
kinase (GI:2224911) [Daucus carota]
Length = 663
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 383 LRIQLPDLRFIDCKIDFSIDTFSAVIQLCKNL 478
L QLP L DC +DFS F+ V +C N+
Sbjct: 16 LATQLPSLMAADCPLDFSGSNFTLVATVCSNI 47
>At4g15410.1 68417.m02355 UBX domain-containing protein low
similarity to XY40 protein [Rattus norvegicus]
GI:2547025; contains Pfam profile PF00789: UBX domain
Length = 421
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = +1
Query: 547 QNLKEAKRIKNTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPPPRSLSATPVASQQNGT 726
+N E + KN T A+ GSS++ S+ P P P R L P A +
Sbjct: 292 ENFTEPPKPKNPFQGVGRTLGASGSGSSSAPQASSAPMNVAPAPSRGLVVDPAAPTTSIQ 351
Query: 727 LR 732
LR
Sbjct: 352 LR 353
>At5g12350.1 68418.m01453 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1062
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 604 FIAATRGSSNSLDRSNGPCPATPPPPRSLSATPVAS 711
F +A+ S + R+ P P PPRS + TP S
Sbjct: 803 FFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLS 838
>At3g19120.1 68416.m02428 expressed protein
Length = 446
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 601 TFIAATRGSSNSLDRSNGPCPATPPP 678
+F+A R S+ S S P P+ PPP
Sbjct: 61 SFLAVNRSSTESSSSSESPSPSPPPP 86
>At2g37580.1 68415.m04610 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 235
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +1
Query: 580 TQAPDTNTFIAATRGSSNSLDRSNGPCPATPPPPRSLSATPV 705
T P T+ T +SNS GP P P PPRS+ TP+
Sbjct: 23 TTVPTTD--FPGTTITSNSTFIIIGPPPPFPAPPRSIDLTPL 62
>At1g07240.1 68414.m00770 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 480
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 504 DSSSECLIPRFLHSCITALNVSIEKSILQSMNLKSGSWILSGLCMGVKC 358
D+SSE I F+H I L +I+ + S + GS ++GL + C
Sbjct: 82 DTSSETYILDFIHKNIPCLRKTIQDLVSSSSSSGGGSSHVAGLILDFFC 130
>At5g65380.1 68418.m08223 ripening-responsive protein, putative
similar to ripening regulated protein DDTFR18
[Lycopersicon esculentum] GI:12231296; contains Pfam
profile PF01554: Uncharacterized membrane protein family
Length = 486
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = +2
Query: 296 KWLSRPKHTLDQYGVHADAALHFTPMHKPLRIQLPDLRFIDCKIDFSIDTFSAVIQL 466
K+L +P + GV A+ P+H + P RF+ C++ + ++A + L
Sbjct: 145 KFLGQPDDIAELSGV---VAIWVIPLHFAFTLSFPLQRFLQCQLKNRVTAYAAAVAL 198
>At5g54310.1 68418.m06764 ARF GAP-like zinc finger-containing
protein ZIGA3 (ZIGA3) nearly identical to ARF GAP-like
zinc finger-containing protein ZIGA3 GI:10441352 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 483
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 504 RWLSARGVTSKTELSKSERS*KNKEHSGSGHEYIHSSDK-RLFE 632
RW+S RG +++ + K+ E SG G+E+ HSS LFE
Sbjct: 121 RWVS-RGEKARSPPRVEQERRKSVERSGPGYEHGHSSSPVNLFE 163
>At5g19420.1 68418.m02314 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1124
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 604 FIAATRGSSNSLDRSNGPCPATPPPPRSLSATPVAS 711
F +A+ S R+ P P PPRS + TP S
Sbjct: 839 FFSASVPGSRIASRATSPISRRPSPPRSTTPTPTLS 874
>At3g09880.1 68416.m01178 serine/threonine protein phosphatase 2A
(PP2A) regulatory subunit B' (B'beta) identical to B'
regulatory subunit of PP2A [Arabidopsis thaliana]
GI:2160692; similar to SWISS-PROT:Q28653
serine/threonine protein phosphatase 2A, 56 kDa
regulatory subunit, delta isoform (PP2A, B subunit, B'
delta isoform, PP2A, B subunit, B56 delta isoform, PP2A,
B subunit, PR61 delta isoform, PP2A, B subunit, R5 delta
isoform, PP2A, B subunit, B'-gamma) [Oryctolagus
cuniculus]; contains Pfam domain, PF01603: Protein
phosphatase 2A regulatory B subunit (B56 family)
Length = 499
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 577 NTQAPDTNTFIA-ATRGSSNSLDRSNGPCPATPPPPRSLSATPV 705
N P +N ++ A+RG+ ++ S P ATPPPP S P+
Sbjct: 31 NRSGPGSNVVVSHASRGAL--VNSSPSPVTATPPPPPLGSVEPL 72
>At1g14710.2 68414.m01759 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 601
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 301 PFVSSRPPEGMVRPIFLNSLPKLS 230
P S RPP G V+PIF+ P L+
Sbjct: 491 PTPSHRPPNGAVQPIFIPPSPPLA 514
>At1g14710.1 68414.m01758 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 601
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 301 PFVSSRPPEGMVRPIFLNSLPKLS 230
P S RPP G V+PIF+ P L+
Sbjct: 491 PTPSHRPPNGAVQPIFIPPSPPLA 514
>At2g11090.1 68415.m01187 expressed protein
Length = 151
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 267 TMPSGGRLETNGSPDQNTPWTSTEFTRTPPYTSRP 371
T P G + + S +TPW+ST +T T + S P
Sbjct: 20 TRPRGRVEDLSTSRHHSTPWSSTTWTTTRSHYSTP 54
>At1g13830.1 68414.m01623 beta-1,3-glucanase-related similar to
beta-1,3-glucanase-like protein (GI:14279169) [Olea
europaea] similar to Glucan endo-1,3-beta-glucosidase
precursor (EC 3.2.1.39) ((1-3)-beta- glucan
endohydrolase) ((1-3)-beta-glucanase) (Beta-1,3-
endoglucanase) (Swiss-Prot:P52409) [Triticum aestivum]
Length = 197
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +3
Query: 267 TMPSGGRLETNGS-PDQNTPWTSTEFTRTPP 356
T P G TNG+ P TP+ T F TPP
Sbjct: 119 TTPPTGTTPTNGTTPFPGTPFPGTPFPGTPP 149
>At1g08430.1 68414.m00932 expressed protein contains Pfam profile
PF01027: Uncharacterized protein family UPF0005
Length = 493
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -1
Query: 701 GVAESDLGGGGVAGHGPFDLSKLFEEPLVAAMNVFVSGA*VFFI 570
GVA GG G+ H LS EP++ M VFV A F+
Sbjct: 81 GVATLVAGGLGIGAHQLARLSGATVEPILLVMLVFVQAALSTFV 124
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,288,903
Number of Sequences: 28952
Number of extensions: 317751
Number of successful extensions: 1477
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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