Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021228
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    29   0.68 
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.8  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    26   6.3  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    26   6.3  
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    25   8.3  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    25   8.3  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   8.3  

>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 16/78 (20%), Positives = 29/78 (37%)
 Frame = -2

Query: 460 IGHLEVSMEQQLTTECQLLARVVHADVEVELLLTQDQPVRQPKLKVPHRPGELIVHKAED 281
           +G LE         +  +       DV+    ++ ++ V +  +K  H     +  +   
Sbjct: 278 VGDLERDGRDTSLGDASVNEAAKETDVDSSRFISDEKAVTEDAMKTEHASNAPLTDERHF 337

Query: 280 SFHVAAGQSSGIFSTCQR 227
            FH + G   GI  T QR
Sbjct: 338 QFHSSEGDIEGIVGTMQR 355


>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 413 TFSCQLLLHTYFK-VPDVRRCQITGMHGCMFIDRRG 517
           +F+C+L L   ++ + D +  ++TG+ GC+F+   G
Sbjct: 265 SFTCRLPLPEPWRGIRDEKLSELTGIPGCIFVHASG 300


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 313 PGELIVHKAEDSFHVAAGQSSGIF 242
           P EL +H AE  FH   GQS  +F
Sbjct: 404 PLELRIHLAEVFFHCCHGQSYNLF 427


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 586 NTMQEHIITNVVSGRKMRIQKYNF 657
           NTM +HI+  +V+G K    K N+
Sbjct: 187 NTMYDHIVVKLVTGLKYEQAKRNY 210


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 248 ARGLPSGDVEAVFSLMDDEFTRSMWHFQFRLTYRLI 355
           A+ LPS D   +   + D F R++ H Q   +Y+ I
Sbjct: 558 AQRLPSSDCSKILKCLLDGFVRNVAHLQNDGSYKTI 593


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 513 RLSMNMQPCMPVIWQRRTSGTL 448
           RL+ + QPC  V W   + GTL
Sbjct: 179 RLTKHTQPCTSVCWNFLSKGTL 200


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +1

Query: 118 NKPFSTARGQYEAVYHSFFLNSGNGPSDLSTASRGWPAGTSRRCPRTAQRRR 273
           N+   T R   + + H F   SG    +LS +   +  GT  +    AQR R
Sbjct: 836 NQQIQTIRSLKQELRHDFVQFSGKKEQELSRSFEKFGLGTETKHDILAQRNR 887


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,183
Number of Sequences: 5004
Number of extensions: 57716
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)