Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021228
(725 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1436 + 33591570-33591728,33594027-33594101,33594487-335945... 73 3e-13
04_04_1059 + 30467324-30467452,30469008-30469082,30469439-304694... 73 3e-13
08_01_0875 - 8584345-8584556,8584653-8584752,8584837-8584939,858... 71 7e-13
09_02_0467 - 9602816-9602881,9603016-9603097,9603184-9603291,960... 69 5e-12
01_06_0131 - 26785733-26785816,26785990-26786092,26786411-267865... 66 2e-11
05_07_0168 + 28122429-28122650,28122651-28122725,28123066-281231... 64 1e-10
02_01_0572 - 4220947-4221167,4221339-4221438,4221525-4221627,422... 39 0.005
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 30 2.2
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 29 3.8
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 29 5.0
04_04_0339 - 24513699-24516827 29 5.0
05_01_0474 - 3797926-3798609 28 6.6
03_02_0165 + 6083059-6084252,6084664-6084741 28 6.6
01_06_0282 - 28160321-28160417,28160585-28160653,28161090-281611... 28 6.6
01_03_0044 - 11927272-11928516 28 6.6
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604... 28 8.7
05_03_0644 + 16527364-16527961,16528048-16528622,16528710-16528877 28 8.7
02_02_0554 - 11434744-11435364,11435741-11436442 28 8.7
01_01_0412 - 3099509-3099634,3099758-3099904,3099991-3100089,310... 28 8.7
>04_04_1436 +
33591570-33591728,33594027-33594101,33594487-33594543,
33594635-33594795,33594954-33595094,33595344-33595446,
33595535-33595634,33595745-33595983
Length = 344
Score = 72.5 bits (170), Expect = 3e-13
Identities = 38/87 (43%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Frame = +3
Query: 15 VVLDRGNNTTCTVNLFGATVVSWR-VNNQEQLFVSKQAVFDGKRAIRGGIPFVFPQFGQW 191
VVL ++ V L+G V SW+ + +E LFVS +A+F +AIRGGIP FPQF +
Sbjct: 42 VVLREVRGSSAEVYLYGGHVTSWKDEHGEELLFVSNKAIFKPPKAIRGGIPICFPQFSNF 101
Query: 192 AFGPQHGFARVARWHVEKMPEDCPAAT 272
HGFAR W VE P P T
Sbjct: 102 GNLDPHGFARNRTWSVENDPPPFPVPT 128
Score = 37.9 bits (84), Expect = 0.008
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = +1
Query: 529 YQETREVVTVGEWTDRIYQNTMQEHIITNVVSGRKMRIQKYNFPDTVIWEPVVGVREGDP 708
Y E + + DRIY T + I + R ++K PD V+W P +
Sbjct: 220 YTEQGDAIVFESELDRIYLGTPSKIAIIDHEKKRTFVVRKGGLPDAVVWNPWDKKAKAMS 279
Query: 709 DFGDD 723
DFGDD
Sbjct: 280 DFGDD 284
>04_04_1059 +
30467324-30467452,30469008-30469082,30469439-30469495,
30469587-30469747,30469850-30469990,30470148-30470191,
30470854-30470972,30471039-30471138,30471347-30471453,
30471944-30471991
Length = 326
Score = 72.5 bits (170), Expect = 3e-13
Identities = 37/87 (42%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Frame = +3
Query: 15 VVLDRGNNTTCTVNLFGATVVSWRVNN-QEQLFVSKQAVFDGKRAIRGGIPFVFPQFGQW 191
VVL + V+L+G V SW+ + E LFVS +A F +AIRGGIP FPQFG
Sbjct: 32 VVLREARGFSAEVHLYGGQVTSWKNDRGDELLFVSSKATFKPPKAIRGGIPICFPQFGTH 91
Query: 192 AFGPQHGFARVARWHVEKMPEDCPAAT 272
+HGFAR W ++ P P +T
Sbjct: 92 GILEKHGFARNRFWAIDDNPPPFPTST 118
>08_01_0875 -
8584345-8584556,8584653-8584752,8584837-8584939,
8585505-8585645,8585756-8585916,8585997-8586053,
8586401-8586475,8587747-8587986
Length = 362
Score = 71.3 bits (167), Expect = 7e-13
Identities = 35/72 (48%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Frame = +3
Query: 51 VNLFGATVVSWRVNNQEQL-FVSKQAVFDGKRAIRGGIPFVFPQFGQWAFGPQHGFARVA 227
V L+GA V SW+ ++ E+L FVS +A+F +AIRGGIP FPQFG QHGFAR
Sbjct: 81 VYLYGAQVTSWKNDHAEELLFVSSKAIFKPPKAIRGGIPICFPQFGTHGNLEQHGFARNR 140
Query: 228 RWHVEKMPEDCP 263
W ++ P P
Sbjct: 141 LWTIDDNPPPLP 152
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +2
Query: 317 MWHFQFRLTYRLILREK-ELHFNIGVYNPSKE-LTFSCQLLLHTYFKVPDVRRCQITGMH 490
+W F R+ L +L + N + + +FS HTYF V D+ ++ G+
Sbjct: 174 IWPHSFEFRLRVALGPNGDLSLTSRIRNTNTDGRSFSYTFAYHTYFSVSDISEVRVEGLE 233
Query: 491 GCMFIDR-RGK 520
++D +GK
Sbjct: 234 TMDYLDNLKGK 244
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/64 (23%), Positives = 25/64 (39%)
Frame = +1
Query: 529 YQETREVVTVGEWTDRIYQNTMQEHIITNVVSGRKMRIQKYNFPDTVIWEPVVGVREGDP 708
+ E + + D++Y + I + R + K PD V+W P +
Sbjct: 247 FTEQGDAIVFESEIDKVYLAAPSKIAIIDHEKKRTFVLTKEGLPDAVVWNPWDKKAKAMQ 306
Query: 709 DFGD 720
DFGD
Sbjct: 307 DFGD 310
>09_02_0467 -
9602816-9602881,9603016-9603097,9603184-9603291,
9603803-9603900,9603986-9604084,9604202-9604339,
9604748-9604799,9604876-9604989,9605054-9605142,
9605674-9605707,9605900-9606019,9606138-9606220
Length = 360
Score = 68.5 bits (160), Expect = 5e-12
Identities = 38/88 (43%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Frame = +3
Query: 51 VNLFGATVVSWRV-NNQEQLFVSKQAVFDGKRAIRGGIPFVFPQFGQWAFGPQHGFARVA 227
+ LFGA V SW+V + ++ LFV AVF+G++ I GGIP FPQFG QHGFAR
Sbjct: 113 IYLFGACVTSWKVPSGKDLLFVRPDAVFNGQKPISGGIPHCFPQFGPGTM-QQHGFARNM 171
Query: 228 RWHV--EKMPEDCPAATWKLSSALWTMS 305
W + + E PA T +L ++ S
Sbjct: 172 NWSITDSEANEGDPAVTLELKDDSYSRS 199
Score = 50.8 bits (116), Expect = 1e-06
Identities = 24/82 (29%), Positives = 40/82 (48%)
Frame = +2
Query: 266 GDVEAVFSLMDDEFTRSMWHFQFRLTYRLILREKELHFNIGVYNPSKELTFSCQLLLHTY 445
GD L DD ++RSMW F F+ Y++ L L + + N + + FS LH+Y
Sbjct: 183 GDPAVTLELKDDSYSRSMWDFSFQALYKVALHSTSLSTTLKITN-TDDKPFSFNSALHSY 241
Query: 446 FKVPDVRRCQITGMHGCMFIDR 511
F + + G+ GC +++
Sbjct: 242 FSA-SISGVSVKGLKGCKTLNK 262
>01_06_0131 -
26785733-26785816,26785990-26786092,26786411-26786545,
26787234-26787397,26787542-26787598,26788201-26788275,
26788410-26788511
Length = 239
Score = 66.5 bits (155), Expect = 2e-11
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = +3
Query: 15 VVLDRGNNTTCTVNLFGATVVSWRVNNQEQL-FVSKQAVFDGKRAIRGGIPFVFPQFGQW 191
V++ + V+L G VVSWR + E+L F S +A+F +A+RGGIP FPQFG
Sbjct: 23 VMIRSPRGASVLVSLHGGQVVSWRNDRGEELLFTSSKAIFKPPKAMRGGIPICFPQFGNC 82
Query: 192 AFGPQHGFARVARWHVE 242
QHGFAR W ++
Sbjct: 83 GTLEQHGFARNRLWAID 99
>05_07_0168 +
28122429-28122650,28122651-28122725,28123066-28123122,
28123248-28123411,28123672-28123806,28123908-28124010,
28124165-28124264,28124348-28124556
Length = 354
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = +3
Query: 51 VNLFGATVVSWRVNNQEQL-FVSKQAVFDGKRAIRGGIPFVFPQFGQWAFGPQHGFARVA 227
V+L G V+SWR + E+L F S +A+F +A+RGGIP FPQFG QHGFAR
Sbjct: 75 VSLHGGQVLSWRNDRGEELLFTSSKAIFKPPKAMRGGIPICFPQFGNSGTLEQHGFARNR 134
Query: 228 RWHVEK 245
W +++
Sbjct: 135 IWALDE 140
Score = 34.7 bits (76), Expect = 0.076
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +1
Query: 529 YQETREVVTVGEWTDRIYQNTMQEHIITNVVSGRKMRIQKYNFPDTVIWEPVVGVREGDP 708
+ E + +T DR+Y ++ + + R I+K PD V+W P +
Sbjct: 240 FTEQGDAITFESEVDRVYVSSPNVIAVLDHEKKRTFVIRKEGLPDVVVWNPWEKKSKNIV 299
Query: 709 DFGDD 723
DFGD+
Sbjct: 300 DFGDE 304
>02_01_0572 -
4220947-4221167,4221339-4221438,4221525-4221627,
4221896-4222036,4222162-4222319,4222752-4222826,
4222852-4222910,4223085-4223183,4223464-4223596
Length = 362
Score = 38.7 bits (86), Expect = 0.005
Identities = 26/86 (30%), Positives = 37/86 (43%)
Frame = +3
Query: 54 NLFGATVVSWRVNNQEQLFVSKQAVFDGKRAIRGGIPFVFPQFGQWAFGPQHGFARVARW 233
NL G+ + + + N + Q +F + R + FV +FG QHGFAR W
Sbjct: 82 NLTGSLLSFFFLRNGQVFLYGGQVIF-WENEYREQLLFVSRKFGNHGVLEQHGFARNRLW 140
Query: 234 HVEKMPEDCPAATWKLSSALWTMSSP 311
V++ P PA T L SP
Sbjct: 141 SVDETPPPFPATTSNCHIDLILKQSP 166
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = +1
Query: 535 ETREVVTVGEWTDRIYQNTMQEHIITNVVSGRKMRIQKYNFPDTVIWEPVVGVREGDPDF 714
E + V +++Y + + +I + R ++K PD V+W P + DF
Sbjct: 246 EQGDAVVFESEAEKVYLSAPPKIVIIDHDKKRTFELRKEGLPDVVVWNPWDRKAKTILDF 305
Query: 715 GDD 723
G++
Sbjct: 306 GEE 308
>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +2
Query: 23 RQRQQYNMYRKSFRCYCSVMEGEQPRAIIC*QTSRFRRQEGNTR 154
R Q N++ K F+ YC+ P ++C + + R++ N +
Sbjct: 1606 RINQDCNIWLKIFKVYCTTQPSSLPTLLLCQKLASLARKQSNLK 1649
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 286 EDSFHVAAGQSSGIFSTCQRATRAKPC*GPK 194
ED++ VA G S FS C+RA P P+
Sbjct: 60 EDAYAVAVGCSCSSFSCCRRALMLSPASAPR 90
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 546 GGHGRRVDGPHLPEHDAGAHHNERCQRTEDA 638
GGH +R H P D HH++R Q + +A
Sbjct: 559 GGHHQRRRHHHPPAWDVEGHHHDRQQHSHEA 589
>04_04_0339 - 24513699-24516827
Length = 1042
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +2
Query: 314 SMWHFQFRLTYRLILRE-KELHFNIGVYNPSKELTFS-CQLLLHTYFKVPDVRRCQITGM 487
S+ + QF + L E EL ++G + L S C+ LLH + V ++ QI +
Sbjct: 603 SICNLQFLKNFNLSRTEIAELPESVGKMQALQVLDLSHCEKLLHLHESVSNLVNLQILNL 662
Query: 488 HGCMFI 505
GC ++
Sbjct: 663 EGCHYL 668
>05_01_0474 - 3797926-3798609
Length = 227
Score = 28.3 bits (60), Expect = 6.6
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = -1
Query: 563 SPTVTTSRVSW-YTAPSRVCQ*---TCSRACR*SGSGVHRAP*SKYGAAADN*MSAPCSG 396
SP T+S SW Y++PS V T +A + + H GAA D+ +A C G
Sbjct: 123 SPCSTSSSSSWSYSSPSSVSMSPVFTVHQASPMAVARSHHTRACSAGAAYDDAAAARCFG 182
Query: 395 CTRRC*SG 372
R C G
Sbjct: 183 MERECERG 190
>03_02_0165 + 6083059-6084252,6084664-6084741
Length = 423
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = -3
Query: 660 GEVVLLYPHLPSADNVRYDVLLHRVLVDAVRPLADRDHLAGLLVHGTFPRLS 505
GEV+ L+ LP A L L + RPLA R A LL G P S
Sbjct: 11 GEVLRLFRSLPFAPTAPLFTTLISSLAASGRPLAARAAFASLLKSGVPPTAS 62
>01_06_0282 -
28160321-28160417,28160585-28160653,28161090-28161145,
28161650-28161741,28162314-28162398,28162512-28162628,
28162766-28162798,28163109-28163199,28163908-28163967,
28164115-28164180,28165238-28165430,28165665-28165821
Length = 371
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 573 PHLPEHDAGAHHNERCQRTEDADTEV 650
P LP+H A HH R + DA EV
Sbjct: 41 PSLPQHSAPIHHRRRVINSIDASGEV 66
>01_03_0044 - 11927272-11928516
Length = 414
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = +3
Query: 156 GIPFVFPQFGQWAFGPQHGFARVARWHVEKMPEDCPAA 269
G P P WA G +RVARW E MP+ AA
Sbjct: 290 GGPPCDPDGRDWAGGGGDAASRVARWIEEFMPDHVEAA 327
>07_03_0860 +
22057309-22058453,22059833-22059964,22060328-22060412,
22061666-22061867,22062273-22062344,22062509-22062573,
22062682-22062741,22063033-22064379,22064463-22064607,
22064688-22067442,22068540-22068630,22068655-22068873
Length = 2105
Score = 27.9 bits (59), Expect = 8.7
Identities = 27/93 (29%), Positives = 41/93 (44%)
Frame = +1
Query: 142 GQYEAVYHSFFLNSGNGPSDLSTASRGWPAGTSRRCPRTAQRRRGSCLQPYGR*VHQVDV 321
G Y + SF +N G G S + +PA TS P +++R L P G H+V V
Sbjct: 547 GAYNLQFGSFPMNGGTGGSTMQ-----FPARTSSAPPNLDEQKRMQAL-PEG---HKV-V 596
Query: 322 ALSVSADVPADLA*EGAPLQHRRVQPEQGADIQ 420
+ P + PLQ ++ QP+ +Q
Sbjct: 597 PSGLVPQAPKHQQ-QQQPLQQQKQQPQSQPPLQ 628
>05_03_0644 + 16527364-16527961,16528048-16528622,16528710-16528877
Length = 446
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +3
Query: 237 VEK-MPEDCPAATWKLSSALWTMSSPGR 317
+EK +P C W + + LW S+PGR
Sbjct: 336 IEKILPHACRIYEWAMPAELWLSSNPGR 363
>02_02_0554 - 11434744-11435364,11435741-11436442
Length = 440
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +1
Query: 517 EGAVYQETREVVTVGEWTDRIYQNTMQEHIITNVVSGRKMRIQKYNFPDTVI 672
EGA ++ + EW+++ Y NT T ++++I+K+ D V+
Sbjct: 143 EGAREWRKMQIAELEEWSEKAYHNTKIYKERTKCCYDKRIKIKKFKPGDKVL 194
>01_01_0412 -
3099509-3099634,3099758-3099904,3099991-3100089,
3100171-3100602,3101121-3101599,3101683-3101728
Length = 442
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 675 PDHCIGEVVLLYPHLPSADNVRYDVLLHRVLVDAVRP 565
P H G+ V Y HLPS + + H V++ + +P
Sbjct: 225 PRHVHGDTVPSYIHLPSVASSSSTAIPHEVIIPSYQP 261
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,100,389
Number of Sequences: 37544
Number of extensions: 453399
Number of successful extensions: 1513
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1507
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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