Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021228
(725 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30648| Best HMM Match : PsbI (HMM E-Value=6.2) 41 9e-04
SB_12737| Best HMM Match : C_tripleX (HMM E-Value=0.027) 32 0.54
SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012) 32 0.54
SB_20347| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-20) 30 2.2
SB_37028| Best HMM Match : Ice_nucleation (HMM E-Value=0.0014) 29 5.1
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 29 5.1
SB_17299| Best HMM Match : Toxin_31 (HMM E-Value=4) 28 6.7
SB_47664| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_14584| Best HMM Match : IBV_3C (HMM E-Value=4.1) 28 8.9
SB_2307| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_30648| Best HMM Match : PsbI (HMM E-Value=6.2)
Length = 372
Score = 41.1 bits (92), Expect = 9e-04
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +2
Query: 416 FSCQLLLHTYFKVPDVRRCQITGMHGCMFIDR 511
F LLHTYF++PDV + +TG+ G ++D+
Sbjct: 27 FDFTTLLHTYFRIPDVTKTTVTGLRGASYVDK 58
Score = 41.1 bits (92), Expect = 9e-04
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +1
Query: 514 REGAVYQETREVVTVGEWTDRIYQNTMQEHIITNVVSGRKMRIQKYNFPDT 666
+ G + +ETR+ V V TDR+Y +T H ++N + I K+N PDT
Sbjct: 60 QNGDICKETRDFVQVDCHTDRVYMDTASSHRLSNSPCDGDIIIDKHNLPDT 110
>SB_12737| Best HMM Match : C_tripleX (HMM E-Value=0.027)
Length = 442
Score = 31.9 bits (69), Expect = 0.54
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -2
Query: 235 CQRATRAKPC*GPKAHCPN*G-KTNGIPPRIALLPSKTAC-LLTNNCS 98
C +AK C HCP+ G T+ I PRI LP++ C +++ CS
Sbjct: 322 CNLICQAKLC---YPHCPSGGCVTSNIKPRIVALPTRVRCEVISGGCS 366
>SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012)
Length = 489
Score = 31.9 bits (69), Expect = 0.54
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -2
Query: 235 CQRATRAKPC*GPKAHCPN*G-KTNGIPPRIALLPSKTAC-LLTNNCS 98
C +AK C HCP+ G T+ I PRI LP++ C +++ CS
Sbjct: 322 CNLICQAKLC---YPHCPSGGCVTSNIKPRIVALPTRVRCEVISGGCS 366
>SB_20347| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-20)
Length = 1074
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +1
Query: 187 NGPSDLSTASRGWPAGTSRRCPRTAQRRRGSCLQPYGR*VHQVDVALSVSADV 345
NGP L+ +GWPA R P A+ +G+ V + D++ ++ ++
Sbjct: 509 NGPHWLTGPEQGWPALQIERTPAGAEEEKGTVSMVVNTRVPKSDISSVINPNI 561
>SB_37028| Best HMM Match : Ice_nucleation (HMM E-Value=0.0014)
Length = 916
Score = 28.7 bits (61), Expect = 5.1
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 541 REVVTVGEWTDRIYQNTMQEHIITNVVSGRKMRIQKYNFPDTVIWE-PVVGVRE 699
+E + G W R +QE+ T V R MR+Q+Y TVIWE +GV+E
Sbjct: 548 QEYGSTGVWEYR--SMGVQEYGSTGVWEYRSMRVQEYE--STVIWEYRSMGVQE 597
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 572 SVHSPTVTTSRVSWYTAPSRVCQ*TCSRACR*SGSGVHRAP*SK 441
S+H+PT R+ S T R C SGS +H P +K
Sbjct: 495 SIHAPTCNKDRIK--AVSSATAPKTSERFCSKSGSSIHALPRNK 536
>SB_17299| Best HMM Match : Toxin_31 (HMM E-Value=4)
Length = 193
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 714 EVRISFAYSDHGFPDHCIGEVVLLYPHLPSADN 616
E+ S Y +G P HCI + ++YP + + N
Sbjct: 7 ELLPSRGYPGNGNPIHCIASLPIMYPRIKESTN 39
>SB_47664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 187 NGPSDLSTASRGWPAGTSRRCPRTAQRRRGS 279
NGP L+ +GWPA R P A+ +G+
Sbjct: 480 NGPHWLTGPEQGWPALHIERTPAGAEEEKGT 510
>SB_14584| Best HMM Match : IBV_3C (HMM E-Value=4.1)
Length = 311
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 254 GLPSGDVEAVFSLMDDEFTRS 316
G+P +V+ +F+LMDD F S
Sbjct: 266 GIPQSEVDGIFNLMDDFFNLS 286
>SB_2307| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 254 GLPSGDVEAVFSLMDDEFTRS 316
G+P +V+ +F+LMDD F S
Sbjct: 69 GIPQSEVDGIFNLMDDFFNLS 89
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,786,732
Number of Sequences: 59808
Number of extensions: 498377
Number of successful extensions: 1480
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1479
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -