Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021228
(725 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g01590.2 68416.m00090 aldose 1-epimerase family protein simil... 71 8e-13
At3g01590.1 68416.m00089 aldose 1-epimerase family protein simil... 71 8e-13
At5g57330.1 68418.m07161 aldose 1-epimerase family protein conta... 68 6e-12
At4g25900.1 68417.m03724 aldose 1-epimerase family protein simil... 67 1e-11
At5g14500.1 68418.m01698 aldose 1-epimerase family protein simil... 66 2e-11
At3g61610.1 68416.m06904 aldose 1-epimerase family protein simil... 63 2e-10
At4g23730.1 68417.m03414 aldose 1-epimerase family protein simil... 63 2e-10
At5g66530.1 68418.m08388 aldose 1-epimerase family protein simil... 61 6e-10
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 29 2.4
At2g36690.1 68415.m04501 oxidoreductase, 2OG-Fe(II) oxygenase fa... 29 3.1
At1g12570.1 68414.m01459 glucose-methanol-choline (GMC) oxidored... 29 3.1
At5g66680.1 68418.m08406 dolichyl-diphosphooligosaccharide-prote... 29 4.1
At1g30330.1 68414.m03709 auxin-responsive factor (ARF6) identica... 29 4.1
At1g78930.1 68414.m09202 mitochondrial transcription termination... 28 7.2
>At3g01590.2 68416.m00090 aldose 1-epimerase family protein similar
to apospory-associated protein C; APOC [Chlamydomonas
reinhardtii] GI:6970044 Pfam profile PF01263: Aldose
1-epimerase
Length = 306
Score = 70.9 bits (166), Expect = 8e-13
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Frame = +3
Query: 6 TSVVVLDRGNNTTCTVNLFGATVVSWRVNNQEQL-FVSKQAVFDGKRAIRGGIPFVFPQF 182
+S ++L +T V LFG V+SW+ +E+L ++S +A + +AIRGGIP FPQF
Sbjct: 12 SSRIILTEPRGSTAEVLLFGGQVISWKNERREELLYMSSKAQYKPPKAIRGGIPVCFPQF 71
Query: 183 GQWAFGPQHGFARVARWHVEKMPEDCPAA 269
G + +HGFAR W ++ P P A
Sbjct: 72 GNFGGLERHGFARNKFWSHDEDPSPLPPA 100
Score = 34.3 bits (75), Expect = 0.083
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +1
Query: 529 YQETREVVTVGEWTDRIYQNTMQEHIITNVVSGRKMRIQKYNFPDTVIWEPVVGVREGDP 708
+ E + +T DR+Y NT + + + R + ++K P+ V+W P +
Sbjct: 189 FTEQADAITFDGEVDRVYLNTPTKIAVIDHERKRTIELRKEGMPNAVVWNPWDKKAKTIA 248
Query: 709 DFGDD 723
D GD+
Sbjct: 249 DMGDE 253
>At3g01590.1 68416.m00089 aldose 1-epimerase family protein similar
to apospory-associated protein C; APOC [Chlamydomonas
reinhardtii] GI:6970044 Pfam profile PF01263: Aldose
1-epimerase
Length = 306
Score = 70.9 bits (166), Expect = 8e-13
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Frame = +3
Query: 6 TSVVVLDRGNNTTCTVNLFGATVVSWRVNNQEQL-FVSKQAVFDGKRAIRGGIPFVFPQF 182
+S ++L +T V LFG V+SW+ +E+L ++S +A + +AIRGGIP FPQF
Sbjct: 12 SSRIILTEPRGSTAEVLLFGGQVISWKNERREELLYMSSKAQYKPPKAIRGGIPVCFPQF 71
Query: 183 GQWAFGPQHGFARVARWHVEKMPEDCPAA 269
G + +HGFAR W ++ P P A
Sbjct: 72 GNFGGLERHGFARNKFWSHDEDPSPLPPA 100
Score = 34.3 bits (75), Expect = 0.083
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +1
Query: 529 YQETREVVTVGEWTDRIYQNTMQEHIITNVVSGRKMRIQKYNFPDTVIWEPVVGVREGDP 708
+ E + +T DR+Y NT + + + R + ++K P+ V+W P +
Sbjct: 189 FTEQADAITFDGEVDRVYLNTPTKIAVIDHERKRTIELRKEGMPNAVVWNPWDKKAKTIA 248
Query: 709 DFGDD 723
D GD+
Sbjct: 249 DMGDE 253
>At5g57330.1 68418.m07161 aldose 1-epimerase family protein contains
Pfam profile PF01263 Aldose 1-epimerase
Length = 312
Score = 68.1 bits (159), Expect = 6e-12
Identities = 34/84 (40%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +3
Query: 15 VVLDRGNNTTCTVNLFGATVVSWRVNNQEQLF-VSKQAVFDGKRAIRGGIPFVFPQFGQW 191
+VL + V L+G+ V SW+ N E+L +S +A+F + IRGGIP FPQF +
Sbjct: 20 IVLRESRGRSAEVYLYGSHVTSWKNENGEELLHLSSKAIFKPPKPIRGGIPLCFPQFSNF 79
Query: 192 AFGPQHGFARVARWHVEKMPEDCP 263
HGFAR W VE P P
Sbjct: 80 GTLESHGFARNRIWEVEANPPPLP 103
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +2
Query: 263 SGDVEAVFSLMDDEFTRSMWHFQFRLTYRLILREKELHFNIGVYNPSKE-LTFSCQLLLH 439
S V+ + +D+ +F+FRL L E EL + N + + F+ H
Sbjct: 109 SAFVDLILRPTEDDLKIWPNNFEFRLRIALGT-EGELTLTSRIRNTNSDGKPFTFTFAYH 167
Query: 440 TYFKVPDVRRCQITGMHGCMFID 508
TYF V D+ ++ G+ ++D
Sbjct: 168 TYFSVSDISEVRVEGLETLDYLD 190
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +1
Query: 529 YQETREVVTVGEWTDRIYQNTMQEHIITNVVSGRKMRIQKYNFPDTVIWEPVVGVREGDP 708
+ E + +T D+IY +T + I + R I+K D V+W P +
Sbjct: 198 FTEQGDAITFESEVDKIYLSTPTKIAILDHEKKRTFVIRKDGLADAVVWNPWDKKSKTIS 257
Query: 709 DFGDD 723
D GD+
Sbjct: 258 DLGDE 262
>At4g25900.1 68417.m03724 aldose 1-epimerase family protein similar
to apospory-associated protein C; APOC [Chlamydomonas
reinhardtii] GI:6970044 Pfam profile PF01263: Aldose
1-epimerase
Length = 318
Score = 66.9 bits (156), Expect = 1e-11
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +3
Query: 12 VVVLDRGNNTTCTVNLFGATVVSWRVNNQEQLFV-SKQAVFDGKRAIRGGIPFVFPQFGQ 188
+++ DR + V L+G V SW+ N E+L V S +A+F IRGGIP +FPQ+
Sbjct: 43 IIIRDR-RGRSAEVYLYGGQVSSWKNENGEELLVMSSKAIFQPPTPIRGGIPVLFPQYSN 101
Query: 189 WAFGPQHGFARVARWHVEKMPEDCPA 266
P HGF R W VE P P+
Sbjct: 102 TGPLPSHGFVRQRFWEVETKPPPLPS 127
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 317 MWHFQFRLTYRLIL-REKELHFNIGVYNPSKELTFSCQLLLHTYFKVPDVRRCQITGMHG 493
+W +F R+ L + +L V N + F+ LH YF V ++ + G+H
Sbjct: 146 IWPHKFEYRLRVALGHDGDLTLTSRVKNTDTK-PFNFTFALHPYFAVSNISEIHVEGLHN 204
Query: 494 CMFIDRR 514
++D++
Sbjct: 205 LDYLDQQ 211
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/58 (22%), Positives = 26/58 (44%)
Frame = +1
Query: 508 QTREGAVYQETREVVTVGEWTDRIYQNTMQEHIITNVVSGRKMRIQKYNFPDTVIWEP 681
Q + + + +V+T DR+Y +T + I + + + + K D V+W P
Sbjct: 210 QQKNRTRFTDHEKVITFNAQLDRLYLSTPDQLRIVDHKKKKTIVVHKEGQVDAVVWNP 267
>At5g14500.1 68418.m01698 aldose 1-epimerase family protein similar
to apospory-associated protein C, Chlamydomonas
reinhardtii, EMBL:AF195243 Pfam profile PF01263: Aldose
1-epimerase
Length = 306
Score = 66.5 bits (155), Expect = 2e-11
Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Frame = +3
Query: 6 TSVVVLDRGNNTTCTVNLFGATVVSWRVNNQEQL-FVSKQAVFDGKRAIRGGIPFVFPQF 182
+S ++L +T V L+G VVSW+ +E+L ++S +A +AIRGG+P FPQF
Sbjct: 12 SSRILLTDPAGSTAEVLLYGGQVVSWKNERREKLLYMSTKAQLKPPKAIRGGLPISFPQF 71
Query: 183 GQWAFGPQHGFARVARWHVEKMPEDCPAA 269
G + +HGFAR W ++ P P A
Sbjct: 72 GNFGALERHGFARNRFWSLDNDPSPLPPA 100
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = +1
Query: 529 YQETREVVTVGEWTDRIYQNTMQEHIITNVVSGRKMRIQKYNFPDTVIWEPVVGVREGDP 708
+ E + +T D++Y NT + I + R + ++K P+ +W P +
Sbjct: 189 FTEQADAITFDGEVDKVYLNTPTKIAIIDHERKRTIELRKEGMPNAAVWNPWDKKAKSIA 248
Query: 709 DFGDD 723
D GD+
Sbjct: 249 DMGDE 253
>At3g61610.1 68416.m06904 aldose 1-epimerase family protein similar
to apospory-associated protein C; APOC [Chlamydomonas
reinhardtii] GI:6970044; contains Pfam profile PF01263:
Aldose 1-epimerase
Length = 317
Score = 63.3 bits (147), Expect = 2e-10
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Frame = +3
Query: 15 VVLDRGNNTTCTVNLFGATVVSWRVN-NQEQLFVSKQAVFDGKRAIRGGIPFVFPQFGQW 191
V+L + + ++L G V+SWR +E LF S +A+F +++RGGI +PQFG
Sbjct: 26 VLLRNPHGASAKISLHGGQVISWRNELGEELLFTSNKAIFKPPKSMRGGIQICYPQFGDC 85
Query: 192 AFGPQHGFARVARWHVEKMP 251
QHGFAR W +++ P
Sbjct: 86 GSLDQHGFARNKIWVIDENP 105
Score = 31.5 bits (68), Expect = 0.59
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +1
Query: 535 ETREVVTVGEWTDRIYQNTMQEHIITNVVSGRKMRIQKYNFPDTVIWEPVVGVREGDPDF 714
E + +T DR Y + + + + R I K PDTV+W P + DF
Sbjct: 205 EQGDAITFESEMDRTYLRSPKVVAVLDHERKRTYVIGKEGLPDTVVWNPWEKKSKTMADF 264
Query: 715 GDD 723
GD+
Sbjct: 265 GDE 267
>At4g23730.1 68417.m03414 aldose 1-epimerase family protein similar
to apospory-associated protein C; APOC [Chlamydomonas
reinhardtii] GI:6970044 Pfam profile PF01263: Aldose
1-epimerase
Length = 306
Score = 62.9 bits (146), Expect = 2e-10
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +3
Query: 6 TSVVVLDRGNNTTCTVNLFGATVVSWRVNN-QEQLFVSKQAVFDGKRAIRGGIPFVFPQF 182
T ++L + ++L G V+SW+ + E LF S +A +RGGIP FPQF
Sbjct: 24 TDQILLQNPRGASVKISLHGGQVLSWKTDKGDELLFNSTKANLKPPHPVRGGIPICFPQF 83
Query: 183 GQWAFGPQHGFARVARWHVEKMPEDCPA 266
G QHGFAR W VE P P+
Sbjct: 84 GTRGSLEQHGFARNKMWLVENNPPALPS 111
Score = 34.7 bits (76), Expect = 0.063
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = +1
Query: 529 YQETREVVTVGEWTDRIYQNTMQEHIITNVVSGRKMRIQKYNFPDTVIWEPVVGVREGDP 708
+ E + +T DR+Y N+ I + R I+K PD V+W P
Sbjct: 205 FTEQGDALTFESEIDRVYLNSKDVVAIFDHERKRTFLIKKEGLPDVVVWNPWEKKARALT 264
Query: 709 DFGDD 723
D GDD
Sbjct: 265 DLGDD 269
Score = 32.7 bits (71), Expect = 0.25
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +2
Query: 299 DEFTRSMWHFQFRLTYRLILR-EKELHFNIGVYNPSKELTFSCQLLLHTYFKVPDVRRCQ 475
DE T +W + F R+ L + L V N + + FS + HTYF + D+ +
Sbjct: 128 DEDTMRIWPYSFEFHLRVSLALDGNLTLISRVRNINSK-PFSFSIAYHTYFSISDISEVR 186
Query: 476 ITGMHGCMFID 508
+ G+ ++D
Sbjct: 187 LEGLETLDYLD 197
>At5g66530.1 68418.m08388 aldose 1-epimerase family protein similar
to apospory-associated protein C; APOC [Chlamydomonas
reinhardtii] GI:6970044; contains Pfam profile PF01263:
Aldose 1-epimerase
Length = 307
Score = 61.3 bits (142), Expect = 6e-10
Identities = 39/102 (38%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Frame = +3
Query: 15 VVLDRGNNTTCTVNLFGATVVSWRV-NNQEQLFVSKQAVFDGKRAIRGGIPFVFPQFGQW 191
+VL N+ + LFG + SW+V + ++ LFV AVF+ + I GGIP FPQFG
Sbjct: 48 LVLTSPQNSEAEIYLFGGCITSWKVASGKDLLFVRPDAVFNKIKPISGGIPHCFPQFGPG 107
Query: 192 AFGPQHGFARVARWHV--EKMPEDCPAATWKL-----SSALW 296
QHGF R W V + +D A T +L S A+W
Sbjct: 108 LI-QQHGFGRNMDWSVVDSQNADDNAAVTLELKDGPYSRAMW 148
>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 666
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +1
Query: 190 GPSDLSTASRGWPAGTSRRCPRTAQRRRGSCLQPYGR*VHQVDVALSVSAD 342
GPS +S+ P+G+S R R+ QRR G L+ +H + S++AD
Sbjct: 466 GPS-VSSNEAAAPSGSSSRSHRSRQRRSGLLLERQNDHLHLRHLGRSLAAD 515
>At2g36690.1 68415.m04501 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to IDS3 [Hordeum
vulgare][GI:4514655], leucoanthocyanidin dioxygenase
[SP|P51091][Malus domestica]; contains PF03171
2OG-Fe(II) oxygenase superfamily domain
Length = 366
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -3
Query: 654 VVLLYPHLPSADNVRYDVLLHRVLVDAVRP 565
VV + HL N RY +LHRVLV++ +P
Sbjct: 275 VVNVGDHLEIFSNGRYKSVLHRVLVNSTKP 304
>At1g12570.1 68414.m01459 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 572
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = +3
Query: 9 SVVVLDRG----NNTTCT-VNLFGATVVSWRVNNQEQLFVSKQAVFDGKRAIRGG 158
SV++L+RG NN T ++ FGA + ++ Q FVS+ V + + + GG
Sbjct: 69 SVLLLERGDSPYNNPNITRLSAFGAALSDLSESSPSQRFVSEDGVINARARVLGG 123
>At5g66680.1 68418.m08406 dolichyl-diphosphooligosaccharide-protein
glycosyltransferase 48kDa subunit family protein similar
to SP|Q05052 Dolichyl-diphosphooligosaccharide--protein
glycosyltransferase 48 kDa subunit precursor (EC
2.4.1.119) (Oligosaccharyl transferase 48 kDa subunit)
{Canis familiaris}; contains Pfam profile PF03345:
Dolichyl-diphosphooligosaccharide-protein
glycosyltransferase 48kD subunit
Length = 437
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +2
Query: 269 DVEAVFSLMDD-EFTRSMWHFQFRLTYRLILREKELHFNIGVYNPSKELTFSCQLLLHTY 445
D A++ + DD EF+ ++ + + + + ++ F + K L+ + L HT
Sbjct: 306 DEPAIYRIKDDLEFSVEIYEWSGKSWEPYVANDVQVQFYMMSPYVLKTLSTDKKGLFHTS 365
Query: 446 FKVPDV 463
FKVPDV
Sbjct: 366 FKVPDV 371
>At1g30330.1 68414.m03709 auxin-responsive factor (ARF6) identical
to ARF6 [Arabidopsis thaliana] GI:4102600 (Science 276
(5320), 1865-1868 (1997))
Length = 933
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -2
Query: 415 CQLLARVVHADVEVELLLTQD--QPVRQPKLKVPHRPGEL 302
CQL +HADVE + + Q QP+ + K P+ P EL
Sbjct: 77 CQLHNVTMHADVETDEVYAQMTLQPLNAQEQKDPYLPAEL 116
>At1g78930.1 68414.m09202 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 591
Score = 27.9 bits (59), Expect = 7.2
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -3
Query: 681 GFPDHCIGEVVLLYP 637
G P +C+G+V+LLYP
Sbjct: 275 GIPKYCLGKVLLLYP 289
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,312,743
Number of Sequences: 28952
Number of extensions: 323571
Number of successful extensions: 970
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -