Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021227
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    69   8e-13
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    27   3.1  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.2  
SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi...    26   5.5  
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    26   5.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   9.6  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    25   9.6  

>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 68.5 bits (160), Expect = 8e-13
 Identities = 30/89 (33%), Positives = 50/89 (56%)
 Frame = -2

Query: 524  TETYLQMAAYFTHCKLQPVHQILTLRTALNMFFKLKNYRTAASFARRLLELGPRPEVAQQ 345
            T+  L+++ YF    LQP+H I+ LR A+N   KLKNY++A+    +LL+L      A+ 
Sbjct: 1068 TKRALELSYYFASADLQPMHSIIALRLAINASHKLKNYKSASFLGNKLLQLAESGPAAEA 1127

Query: 344  ARKILQACEKTPTDEHQLLYDEHNPFSVC 258
            A + +   ++ P D  ++ YD H    +C
Sbjct: 1128 ANRAITLGDRNPHDAFEIEYDPHVEMRIC 1156



 Score = 37.1 bits (82), Expect = 0.002
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 243  PIYRGKPEEKCSLCAASFMPEHKGKLCPVCGVAEIGKDALGLR 115
            P+Y G   + CS+C A +   +  ++C VC V  IG+   G R
Sbjct: 1162 PVYSGDDFDVCSVCGAVYHKGYVNEVCTVCDVGGIGQKGTGRR 1204


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 344 ARKILQACEKTPTDEHQLLYDEHNPFSVC 258
           +R +L  C++   D +Q+L  E +P S+C
Sbjct: 369 SRGVLSFCDQAIRDLYQILEVEFHPLSIC 397


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 633 RPSCPRPNSYWPSAGTTSWDSPWRPP 556
           RP+  RPNS+ P   +T + SP  PP
Sbjct: 76  RPTSQRPNSWQPGNASTMYASP--PP 99


>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
 Frame = -2

Query: 461 ILTLRTALNMFFKLKNYRTAASF----ARRLLELGPRPEVAQQARKILQACEKTPTDEHQ 294
           ILT+RT++ + FK+ N +         AR L E G   E A+   ++LQ   K P +E  
Sbjct: 155 ILTVRTSIPLAFKVSNDQLLMELQLCNARALDETGQFLEAAKCYYRVLQ--YKVPGNE-- 210

Query: 293 LLYDEH 276
           L+Y E+
Sbjct: 211 LIYREN 216


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 64  DTRF*RASLSVEL*GTDTEAERVLAD 141
           D  F R  LSVE+  TD E   +LAD
Sbjct: 346 DVIFMRNGLSVEIDNTDAEGRLILAD 371


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 575  TRHGDRQESDAEEHRRRTETYLQMAAYFTHCKLQPVHQILT 453
            ++HGD +E D+E+  R ++    +AA      + P H + T
Sbjct: 1650 SQHGDEEEEDSEDDIRSSKDAAALAAKL-FGGMAPAHPVST 1689


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 392 ARRLLELGPRPEVAQQARKILQ 327
           A R++E+GP P +A  A++ L+
Sbjct: 42  AERIVEIGPSPTLAGMAKRTLK 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,962,038
Number of Sequences: 5004
Number of extensions: 33828
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)