Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021227
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584 87 2e-17
03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964 87 2e-17
09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190 86 2e-17
05_05_0014 - 21523259-21523612,21523877-21524187,21524256-21524469 31 1.1
05_03_0250 + 10955281-10955419,10955524-10955727,10955985-109560... 29 3.3
04_03_0805 - 19850355-19850817,19851146-19851227,19852403-19852412 29 3.3
01_01_1125 - 8920590-8924372 28 5.7
12_02_0298 + 17041206-17041712 28 7.5
11_01_0600 - 4780579-4780839,4781256-4781324,4781535-4781598,478... 28 7.5
08_02_0412 + 16865138-16865392 28 7.5
06_03_0516 + 21661696-21662490 28 7.5
06_01_0614 + 4448129-4448157,4448733-4449231,4449512-4449550,444... 28 7.5
04_03_0734 + 19134129-19134464,19135864-19136789,19137148-191376... 28 7.5
05_03_0685 + 16992899-16993570 27 9.9
05_02_0115 - 6758540-6758771,6759417-6759524,6759670-6759840,675... 27 9.9
>03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584
Length = 1218
Score = 86.6 bits (205), Expect = 2e-17
Identities = 46/104 (44%), Positives = 60/104 (57%)
Frame = -2
Query: 566 GDRQESDAEEHRRRTETYLQMAAYFTHCKLQPVHQILTLRTALNMFFKLKNYRTAASFAR 387
G R E +E R ++AAYFT+CKLQ VH L L +A+ + +K KN+ TA FAR
Sbjct: 1062 GLRMELKRKELRDDVNRQQELAAYFTNCKLQRVHMRLVLGSAMGLCYKQKNFATAEHFAR 1121
Query: 386 RLLELGPRPEVAQQARKILQACEKTPTDEHQLLYDEHNPFSVCG 255
LLE P A++AR++ Q C D +L YD NPF VCG
Sbjct: 1122 MLLENNPNEAQARRARQVQQQC-SGKKDSSELNYDYRNPFVVCG 1164
Score = 55.2 bits (127), Expect = 4e-08
Identities = 22/51 (43%), Positives = 32/51 (62%)
Frame = -1
Query: 252 SYKPIYRGKPEEKCSLCAASFMPEHKGKLCPVCGVAEIGKDALGLRICPLQ 100
+Y PIYRG+ + C C + F+P +G+LC +C +A +G DA GL P Q
Sbjct: 1166 TYVPIYRGQKDVSCPYCGSRFVPSIEGQLCTICELAVVGADASGLVCSPTQ 1216
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/46 (39%), Positives = 34/46 (73%)
Frame = -3
Query: 655 PLLLVDSKAELSEAQQLLAVCRDYLVGLAMETARKAMPKNTVDEQK 518
PL++VDS+ E+ E ++L+ + R+Y++GL ME RK + ++ V+ Q+
Sbjct: 1036 PLIVVDSRREVDEVKELIEIVREYVLGLRMELKRKEL-RDDVNRQQ 1080
>03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964
Length = 1218
Score = 86.6 bits (205), Expect = 2e-17
Identities = 46/104 (44%), Positives = 60/104 (57%)
Frame = -2
Query: 566 GDRQESDAEEHRRRTETYLQMAAYFTHCKLQPVHQILTLRTALNMFFKLKNYRTAASFAR 387
G R E +E R ++AAYFT+CKLQ VH L L +A+ + +K KN+ TA FAR
Sbjct: 1062 GLRMELKRKELRDDVNRQQELAAYFTNCKLQRVHMRLVLGSAMGLCYKQKNFATAEHFAR 1121
Query: 386 RLLELGPRPEVAQQARKILQACEKTPTDEHQLLYDEHNPFSVCG 255
LLE P A++AR++ Q C D +L YD NPF VCG
Sbjct: 1122 MLLENNPNEAQARRARQVQQQC-SGKKDSSELNYDYRNPFVVCG 1164
Score = 55.6 bits (128), Expect = 3e-08
Identities = 22/51 (43%), Positives = 32/51 (62%)
Frame = -1
Query: 252 SYKPIYRGKPEEKCSLCAASFMPEHKGKLCPVCGVAEIGKDALGLRICPLQ 100
+Y PIYRG+ + C C + F+P +G+LC +C +A +G DA GL P Q
Sbjct: 1166 TYVPIYRGQKDVSCPYCGSRFVPSIEGQLCTICELAVVGADASGLLCSPTQ 1216
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/46 (39%), Positives = 34/46 (73%)
Frame = -3
Query: 655 PLLLVDSKAELSEAQQLLAVCRDYLVGLAMETARKAMPKNTVDEQK 518
PL++VDS+ E+ E ++L+ + R+Y++GL ME RK + ++ V+ Q+
Sbjct: 1036 PLIVVDSRREVDEVKELIEIVREYVLGLRMELKRKEL-RDDVNRQQ 1080
>09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190
Length = 1218
Score = 86.2 bits (204), Expect = 2e-17
Identities = 46/104 (44%), Positives = 60/104 (57%)
Frame = -2
Query: 566 GDRQESDAEEHRRRTETYLQMAAYFTHCKLQPVHQILTLRTALNMFFKLKNYRTAASFAR 387
G R E +E R ++AAYFT+CKLQ VH L L +A+ + +K KN+ TA FAR
Sbjct: 1062 GLRMELKRKELRDDVNRQQELAAYFTNCKLQRVHMRLVLGSAMGLCYKQKNFATAEHFAR 1121
Query: 386 RLLELGPRPEVAQQARKILQACEKTPTDEHQLLYDEHNPFSVCG 255
LLE P A++AR++ Q C D +L YD NPF VCG
Sbjct: 1122 MLLENNPNESQAKRARQVQQQC-SGKKDSCELNYDYRNPFVVCG 1164
Score = 55.6 bits (128), Expect = 3e-08
Identities = 22/51 (43%), Positives = 32/51 (62%)
Frame = -1
Query: 252 SYKPIYRGKPEEKCSLCAASFMPEHKGKLCPVCGVAEIGKDALGLRICPLQ 100
+Y PIYRG+ + C C + F+P +G+LC +C +A +G DA GL P Q
Sbjct: 1166 TYVPIYRGQKDVSCPYCGSRFVPSIEGQLCTICELAVVGADASGLLCSPTQ 1216
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/46 (39%), Positives = 34/46 (73%)
Frame = -3
Query: 655 PLLLVDSKAELSEAQQLLAVCRDYLVGLAMETARKAMPKNTVDEQK 518
PL++VDS+ E+ E ++L+ + R+Y++GL ME RK + ++ V+ Q+
Sbjct: 1036 PLIVVDSRREVDEVKELIEIVREYVLGLRMELKRKEL-RDDVNRQQ 1080
>05_05_0014 - 21523259-21523612,21523877-21524187,21524256-21524469
Length = 292
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -1
Query: 633 RPSCPRPNSYWPSAGTTSW--DSPWRPPGKR 547
RPS P+ YW +AGT W S RP G +
Sbjct: 100 RPSRTTPSGYWKAAGTPGWVYSSDGRPIGTK 130
>05_03_0250 +
10955281-10955419,10955524-10955727,10955985-10956065,
10956147-10956287,10956378-10956410,10956809-10956909,
10957282-10957912,10959378-10959514
Length = 488
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 258 RLSYKPIYRGKPEEKCSLCAASFMPEHKGK 169
R + P+Y G P++ C C A F E + +
Sbjct: 200 RTIFSPLYLGGPDQTCRYCGALFWYEERAR 229
>04_03_0805 - 19850355-19850817,19851146-19851227,19852403-19852412
Length = 184
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -1
Query: 651 CCWWTPRPSCPRPNSYWPSAGTTSWDSP 568
CC P+P P P P+ G +W SP
Sbjct: 127 CCDCHPKPPPPAPAPAKPACGCPAWSSP 154
>01_01_1125 - 8920590-8924372
Length = 1260
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/62 (24%), Positives = 26/62 (41%)
Frame = -2
Query: 461 ILTLRTALNMFFKLKNYRTAASFARRLLELGPRPEVAQQARKILQACEKTPTDEHQLLYD 282
++T + F +K A S R+ E+ RP + I C+ TD L+D
Sbjct: 614 VVTCNVLIKALFMIKKVDDACSLFLRMPEMRLRPNIVTYHTVIDMMCKLGETDRALQLFD 673
Query: 281 EH 276
++
Sbjct: 674 DY 675
>12_02_0298 + 17041206-17041712
Length = 168
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -1
Query: 657 CRCCWWTPRPSCPRPNSYWPSAG 589
CR CW P P PNS W +G
Sbjct: 125 CRACWTEPSP----PNSAWSKSG 143
>11_01_0600 -
4780579-4780839,4781256-4781324,4781535-4781598,
4781791-4781919,4782234-4782541
Length = 276
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = -2
Query: 635 QGRAVRGPTVIGRLQGLPRGTRHGDRQ---ESDAEEHRRRTETYLQMAAYFTHCKLQPVH 465
+G R P + L RG RHG R+ A RR T+L A + C+L+ H
Sbjct: 23 RGHPQRSPGIADFGDELQRGVRHGRRRTWLRRRARRRERRRRTWLP-AMWSPDCRLELQH 81
Query: 464 Q 462
+
Sbjct: 82 R 82
>08_02_0412 + 16865138-16865392
Length = 84
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 92 LLNCKGQIRRPSASLPISATPHTGHSFPLCSGMKLAAHSEHFS 220
+ +C+G +RP+ P++A P H L ++L+ + H S
Sbjct: 1 MAHCRGLRQRPALRAPVAAPPVPRHIVLLQPLLRLSGFTRHLS 43
>06_03_0516 + 21661696-21662490
Length = 264
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Frame = -1
Query: 648 CW----WTPRPSCPRPNSYWPSAGTTSWD--SPWRPPGKRCRR 538
CW W P+ P P ++W ++ T + S WR CRR
Sbjct: 174 CWRSPPWRTTPTAPYPLTWWRTSRTGAGGRCSGWRATCSSCRR 216
>06_01_0614 +
4448129-4448157,4448733-4449231,4449512-4449550,
4449590-4449802,4449941-4450227,4450456-4450567,
4451515-4451751,4451857-4451957,4452285-4452384,
4452509-4453141
Length = 749
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 316 FSQAWRIFRACWATSGRGPSSRRRLANEAAVR-*FFSLKN 432
+S WR + AC+ + RRRLA + ++R FFS ++
Sbjct: 667 YSHHWRTWAACFIQAAWRRYKRRRLAKDLSIRESFFSRRS 706
>04_03_0734 +
19134129-19134464,19135864-19136789,19137148-19137615,
19138096-19138159,19138885-19139022
Length = 643
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 471 GLELAVREVGGHLQVRFCSSTVFFGIAFLAVSMAS 575
GL +R VGGH QVR + F I + + +AS
Sbjct: 190 GLMFVIRPVGGHRQVRPSDNNSFMFIYTICLLLAS 224
>05_03_0685 + 16992899-16993570
Length = 223
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 216 KCSLCAASFMPEHKGKLCPVCG 151
+C++C A F +G+L P CG
Sbjct: 135 ECAICIAEFADGEEGRLLPRCG 156
>05_02_0115 -
6758540-6758771,6759417-6759524,6759670-6759840,
6759967-6760077,6760562-6760663,6761139-6761366,
6761568-6761696,6761753-6761869,6761955-6762301,
6762377-6762931,6763104-6763182,6763429-6763595,
6763857-6764075,6764956-6765139,6765175-6765371,
6765717-6766035,6766379-6766538,6767642-6767794,
6767911-6768013
Length = 1226
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 381 EAPRERSGRAVVLQLEEHVEGRPQRED 461
+AP E +G +V L H EG P R D
Sbjct: 599 DAPDELAGTSVNLDSTSHCEGEPSRAD 625
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,033,458
Number of Sequences: 37544
Number of extensions: 307783
Number of successful extensions: 1473
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1468
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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