Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021227
(657 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25108| Best HMM Match : Cornifin (HMM E-Value=0.00015) 59 3e-09
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_58912| Best HMM Match : rve (HMM E-Value=2.2e-17) 30 1.4
SB_56221| Best HMM Match : AOX (HMM E-Value=3.6) 30 1.4
SB_56113| Best HMM Match : zf-CCHC (HMM E-Value=0.0026) 30 1.4
SB_55168| Best HMM Match : rve (HMM E-Value=2.2e-17) 30 1.4
SB_28953| Best HMM Match : rve (HMM E-Value=8.9e-07) 30 1.4
SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17) 30 1.4
SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56) 30 1.4
SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17) 30 1.4
SB_2133| Best HMM Match : rve (HMM E-Value=2.2e-17) 30 1.4
SB_41308| Best HMM Match : rve (HMM E-Value=6e-12) 30 1.4
SB_32270| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_8751| Best HMM Match : zf-CCHC (HMM E-Value=0.01) 30 1.4
SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_25367| Best HMM Match : TPR_1 (HMM E-Value=2.4e-40) 30 1.9
SB_19784| Best HMM Match : PHD (HMM E-Value=0.0006) 30 1.9
SB_17570| Best HMM Match : PHD (HMM E-Value=0.0006) 30 1.9
SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0) 30 1.9
SB_6316| Best HMM Match : tRNA_int_endo (HMM E-Value=0.016) 30 1.9
SB_2748| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7e-08) 30 1.9
SB_54423| Best HMM Match : RVT_1 (HMM E-Value=7.7e-32) 30 1.9
SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_22144| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_59742| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32) 28 5.8
SB_12630| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_49307| Best HMM Match : Pep_M12B_propep (HMM E-Value=0.64) 28 7.7
SB_7094| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_25108| Best HMM Match : Cornifin (HMM E-Value=0.00015)
Length = 858
Score = 59.3 bits (137), Expect = 3e-09
Identities = 24/28 (85%), Positives = 27/28 (96%)
Frame = -2
Query: 506 MAAYFTHCKLQPVHQILTLRTALNMFFK 423
MAAYFTHC LQP+HQILTLRTA+N+FFK
Sbjct: 1 MAAYFTHCNLQPIHQILTLRTAVNLFFK 28
>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1940
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1
Query: 562 SPWRVPRGSPCRRPITVGPRTARPWSPP 645
SP+R P S P+TVG R++RP SPP
Sbjct: 1682 SPYRTP--SDRSSPLTVGGRSSRPRSPP 1707
>SB_58912| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 511
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 639 TP-RPSCPRPNSYWPSAGTTSWDSPWRPP 556
TP RPS P P GTT D+P RPP
Sbjct: 437 TPTRPSPPLTRDTGPGTGTTGSDTPTRPP 465
>SB_56221| Best HMM Match : AOX (HMM E-Value=3.6)
Length = 361
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 639 TP-RPSCPRPNSYWPSAGTTSWDSPWRPP 556
TP RPS P P GTT D+P RPP
Sbjct: 287 TPTRPSPPLTRDTGPGTGTTGSDTPTRPP 315
>SB_56113| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
Length = 1163
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 639 TP-RPSCPRPNSYWPSAGTTSWDSPWRPP 556
TP RPS P P GTT D+P RPP
Sbjct: 1089 TPTRPSPPLTRDTGPGTGTTGSDTPTRPP 1117
>SB_55168| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1017
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 639 TP-RPSCPRPNSYWPSAGTTSWDSPWRPP 556
TP RPS P P GTT D+P RPP
Sbjct: 943 TPTRPSPPLTRDTGPGTGTTGSDTPTRPP 971
>SB_28953| Best HMM Match : rve (HMM E-Value=8.9e-07)
Length = 555
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 639 TP-RPSCPRPNSYWPSAGTTSWDSPWRPP 556
TP RPS P P GTT D+P RPP
Sbjct: 481 TPTRPSPPLTRDTGPGTGTTGSDTPTRPP 509
>SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1229
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 639 TP-RPSCPRPNSYWPSAGTTSWDSPWRPP 556
TP RPS P P GTT D+P RPP
Sbjct: 1155 TPTRPSPPLTRDTGPGTGTTGSDTPTRPP 1183
>SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)
Length = 1566
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = -2
Query: 632 GRAVRGPTVIGRLQGLPRGTRHGDRQESDAEEHRRRTETYLQMAAYFTHCKLQPVHQIL 456
G A RG T P+G +H D + D + +R E+ + + C+ Q H+ L
Sbjct: 946 GEARRGATSKEGETIQPKGNKHDDNKHYDERDVHKRAESRQSLQCWADECRSQHSHRRL 1004
>SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1013
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 639 TP-RPSCPRPNSYWPSAGTTSWDSPWRPP 556
TP RPS P P GTT D+P RPP
Sbjct: 467 TPTRPSPPLTRDTGPGTGTTGSDTPTRPP 495
>SB_2133| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 425
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 639 TP-RPSCPRPNSYWPSAGTTSWDSPWRPP 556
TP RPS P P GTT D+P RPP
Sbjct: 351 TPTRPSPPLTRDTGPGTGTTGSDTPTRPP 379
>SB_41308| Best HMM Match : rve (HMM E-Value=6e-12)
Length = 581
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 639 TP-RPSCPRPNSYWPSAGTTSWDSPWRPP 556
TP RPS P P GTT D+P RPP
Sbjct: 507 TPTRPSPPLTRDTGPGTGTTGSDTPTRPP 535
>SB_32270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 639 TP-RPSCPRPNSYWPSAGTTSWDSPWRPP 556
TP RPS P P GTT D+P RPP
Sbjct: 211 TPTRPSPPLTRDTGPGTGTTGSDTPTRPP 239
>SB_8751| Best HMM Match : zf-CCHC (HMM E-Value=0.01)
Length = 637
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -1
Query: 225 PEEKCSLCAASFMPEHKGKLCPVC-GVAEIGK 133
P EKCS+C + H+ LC C G + I K
Sbjct: 102 PSEKCSVCLRTIARNHRAVLCDCCKGQSHIKK 133
>SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1800
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 225 PEEKCSLCAASFMPEHKGKLCPVC 154
P EKCS+C + H+ LC C
Sbjct: 1007 PSEKCSVCLRTIARNHRAVLCDCC 1030
>SB_25367| Best HMM Match : TPR_1 (HMM E-Value=2.4e-40)
Length = 553
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = -2
Query: 506 MAAYFTHCKLQPVHQILTLRTALNMFFKLKNYRTAASFARRLLELGPRPEVAQQARKILQ 327
MAAYFT KL P + L L + K N + A F + L L P Q +++
Sbjct: 350 MAAYFTASKLMPKCHLPLLYIGLE-YGKTNNAKLAERFFKEALALSPNDPFVHQELGVIK 408
>SB_19784| Best HMM Match : PHD (HMM E-Value=0.0006)
Length = 198
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 225 PEEKCSLCAASFMPEHKGKLCPVC 154
P EKCS+C + H+ LC C
Sbjct: 35 PSEKCSVCLRTIARNHRAVLCDCC 58
>SB_17570| Best HMM Match : PHD (HMM E-Value=0.0006)
Length = 243
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 225 PEEKCSLCAASFMPEHKGKLCPVC 154
P EKCS+C + H+ LC C
Sbjct: 102 PSEKCSVCLRTIARNHRAVLCDCC 125
>SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1623
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 225 PEEKCSLCAASFMPEHKGKLCPVC 154
P EKCS+C + H+ LC C
Sbjct: 102 PSEKCSVCLRTIARNHRAVLCDCC 125
>SB_6316| Best HMM Match : tRNA_int_endo (HMM E-Value=0.016)
Length = 280
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = -1
Query: 270 IQRLRLSYKPIYRGKPEEKCSLCAASFMPEHKGK---LCPVCGVAEIGKDALGLRICPLQ 100
++ L + + + +P CSLC S + EH K +C V +EI K+ L L C +
Sbjct: 215 VEEKSLDTQNVVQSRPLTWCSLCGLSRVNEHAAKEVMICYVIKPSEIMKEDLILPSCIPR 274
Query: 99 F 97
F
Sbjct: 275 F 275
>SB_2748| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7e-08)
Length = 438
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 225 PEEKCSLCAASFMPEHKGKLCPVC 154
P EKCS+C + H+ LC C
Sbjct: 102 PSEKCSVCLRTIARNHRAVLCDCC 125
>SB_54423| Best HMM Match : RVT_1 (HMM E-Value=7.7e-32)
Length = 775
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 225 PEEKCSLCAASFMPEHKGKLCPVC 154
P EKCS+C + H+ LC C
Sbjct: 102 PSEKCSVCLRTIARNHRAVLCDCC 125
>SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 225 PEEKCSLCAASFMPEHKGKLCPVC 154
P EKCS+C + H+ LC C
Sbjct: 750 PSEKCSVCLRTIARNHRAVLCDCC 773
>SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1487
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 616 AQQLLAVCRDYLVGLAMETARKAMPKN 536
A L AVC +YL +AMET + KN
Sbjct: 988 ALDLFAVCLEYLKKVAMETINSTLSKN 1014
>SB_22144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 258 ADAEWIMLVVEQLVLISRGLLAGLEDLPRLLGDLRPG 368
A A I +V L ++RG+ GL D+ + LG+L PG
Sbjct: 536 AVATTIAAIVTSLSSVARGVGNGLMDIGKKLGELLPG 572
>SB_59742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 222 PACRGRWACS*AADAEWIMLVVEQLVLISR 311
PA RG W S + +WI + ++LV++++
Sbjct: 202 PATRGAWVPSYGSFGQWIQIDFQRLVIVTK 231
>SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32)
Length = 1074
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Frame = -1
Query: 621 PRPNSY-WPSAGTTSWDSPWRPPGKR 547
PRP WP G W P R PG+R
Sbjct: 466 PRPGYRPWPRPGYRPWPRPGRTPGRR 491
>SB_12630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1018
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 639 TP-RPSCPRPNSYWPSAGTTSWDSPWRPP 556
TP RPS P P GTT D+P RPP
Sbjct: 944 TPTRPSPPLTIYTGPGTGTTGSDTPTRPP 972
>SB_49307| Best HMM Match : Pep_M12B_propep (HMM E-Value=0.64)
Length = 317
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/49 (26%), Positives = 29/49 (59%)
Frame = -2
Query: 599 RLQGLPRGTRHGDRQESDAEEHRRRTETYLQMAAYFTHCKLQPVHQILT 453
+L+ LP+G DR+ +D +R++ + + + +H +L+P+ Q +T
Sbjct: 35 QLKPLPQGVTECDREGADVLSTQRKSHLLILLTVHTSH-QLEPLSQGVT 82
>SB_7094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 614 PTVIGRLQGLPRGTRHGDRQESDAEEHRRRTETY 513
PT I R +P+G++HG +Q R+R T+
Sbjct: 81 PTKIIRFLTMPKGSKHGYKQSVVQTNTRKRKSTF 114
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,058,870
Number of Sequences: 59808
Number of extensions: 303659
Number of successful extensions: 1535
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1534
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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