Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021227
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical...   126   1e-29
Z54270-6|CAA91028.1|  572|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AF179216-1|AAF67040.1|  233|Caenorhabditis elegans NHR-25 protein.     28   5.1  
AF179214-1|AAF67038.1|  568|Caenorhabditis elegans NHR-25 alpha ...    28   5.1  

>AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical
            protein Y71F9AL.17 protein.
          Length = 1232

 Score =  126 bits (304), Expect = 1e-29
 Identities = 60/106 (56%), Positives = 76/106 (71%)
 Frame = -2

Query: 575  TRHGDRQESDAEEHRRRTETYLQMAAYFTHCKLQPVHQILTLRTALNMFFKLKNYRTAAS 396
            T   D  +++ E+ +R  E    +AAYFTH +LQP+H+ILTLR+A+N FFK+K  +T AS
Sbjct: 1077 TYRKDLPKTNLEDAKRNAE----LAAYFTHFELQPMHRILTLRSAINTFFKMKQMKTCAS 1132

Query: 395  FARRLLELGPRPEVAQQARKILQACEKTPTDEHQLLYDEHNPFSVC 258
              +RLLEL P+PEVA Q RK+L A EK  TD HQL YDEHNPF VC
Sbjct: 1133 LCKRLLELAPKPEVAAQIRKVLTAAEKDNTDAHQLTYDEHNPFVVC 1178



 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 25/50 (50%), Positives = 35/50 (70%)
 Frame = -1

Query: 249  YKPIYRGKPEEKCSLCAASFMPEHKGKLCPVCGVAEIGKDALGLRICPLQ 100
            + P+YRG+P  KC  C AS+    +G++C VC VAE+GK+ LGLRI  L+
Sbjct: 1182 FVPLYRGRPLCKCPYCGASYSEGLEGEVCNVCQVAEVGKNVLGLRISTLK 1231



 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 22/47 (46%), Positives = 35/47 (74%)
 Frame = -3

Query: 655  PLLLVDSKAELSEAQQLLAVCRDYLVGLAMETARKAMPKNTVDEQKR 515
            PL++V SK E++EA+QL+ + R+YL  L +ET RK +PK  +++ KR
Sbjct: 1046 PLIVVSSKQEVAEAEQLITITREYLAALLLETYRKDLPKTNLEDAKR 1092


>Z54270-6|CAA91028.1|  572|Caenorhabditis elegans Hypothetical
           protein F11C1.6a protein.
          Length = 572

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 186 PEHKGKLCPVCG 151
           P H+G++CPVCG
Sbjct: 11  PNHEGEMCPVCG 22


>AF179216-1|AAF67040.1|  233|Caenorhabditis elegans NHR-25 protein.
          Length = 233

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 186 PEHKGKLCPVCG 151
           P H+G++CPVCG
Sbjct: 11  PNHEGEMCPVCG 22


>AF179214-1|AAF67038.1|  568|Caenorhabditis elegans NHR-25 alpha
           protein.
          Length = 568

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 186 PEHKGKLCPVCG 151
           P H+G++CPVCG
Sbjct: 7   PNHEGEMCPVCG 18


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,428,376
Number of Sequences: 27780
Number of extensions: 215107
Number of successful extensions: 794
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)